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2CHN
Biol. Unit 1
Info
Asym.Unit (247 KB)
Biol.Unit 1 (121 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
BACTEROIDES THETAIOTAOMICRON HEXOSAMINIDASE WITH O-GLCNACASE ACTIVITY-NAG-THIAZOLINE COMPLEX
Authors
:
R. J. Dennis, E. J. Taylor, M. S. Macauley, K. A. Stubbs, J. P. Turkenburg S. J. Hart, G. N. Black, D. J. Vocadlo, G. J. Davies
Date
:
15 Mar 06 (Deposition) - 08 May 06 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
O-Glcnacase, Hydrolase, N-Acetylglucosamibe
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. J. Dennis, E. J. Taylor, M. S. Macauley, K. A. Stubbs, J. P. Turkenburg, S. J. Hart, G. N. Black, D. J. Vocadlo, G. J. Davies
Structure And Mechanism Of A Bacterial B-Glucosaminidase Having O-Glcnacase Activity
Nat. Struct. Mol. Biol. V. 13 365 2006
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTa)
4b: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTb)
5a: (UNKa)
5b: (UNKb)
5c: (UNKc)
5d: (UNKd)
5e: (UNKe)
5f: (UNKf)
5g: (UNKg)
5h: (UNKh)
5i: (UNKi)
5j: (UNKj)
5k: (UNKk)
5l: (UNKl)
5m: (UNKm)
5n: (UNKn)
5o: (UNKo)
5p: (UNKp)
5q: (UNKq)
5r: (UNKr)
5s: (UNKs)
5t: (UNKt)
5u: (UNKu)
5v: (UNKv)
5w: (UNKw)
5x: (UNKx)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
4
NGT
1
Ligand/Ion
3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL
5
UNK
-1
Mod. Amino Acid
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:32 , GLU A:61 , ASP A:64 , HOH A:2031 , HOH A:2047
BINDING SITE FOR RESIDUE CA A1717
2
AC3
SOFTWARE
GLY A:135 , PHE A:136 , LYS A:166 , ASP A:242 , ASP A:243 , CYS A:278 , TYR A:282 , VAL A:314 , ASN A:339 , ASP A:344 , ASN A:372 , HOH A:2535
BINDING SITE FOR RESIDUE NGT A1718
3
AC5
SOFTWARE
TYR A:137 , ASP A:344 , TYR A:345 , ARG A:347 , TYR A:550 , GLN A:551 , HOH A:2536
BINDING SITE FOR RESIDUE GOL A1719
4
AC7
SOFTWARE
TYR A:356 , TRP A:400 , GLU A:438 , HOH A:2420 , HOH A:2421 , HOH C:2005 , HOH C:2006
BINDING SITE FOR RESIDUE GOL C1720
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2chna1 (A:437-590)
1b: SCOP_d2chnb1 (B:437-590)
2a: SCOP_d2chna3 (A:4-126)
2b: SCOP_d2chnb3 (B:5-126)
3a: SCOP_d2chna2 (A:127-436)
3b: SCOP_d2chnb2 (B:127-436)
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Classes
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Hyaluronidase domain-like
(25)
Superfamily
:
Hyaluronidase post-catalytic domain-like
(20)
Family
:
Hyaluronidase post-catalytic domain-like
(15)
Protein domain
:
Glucosaminidase GH84 post-catalytic domain
(8)
Bacteroides thetaiotaomicron [TaxId: 818]
(8)
1a
d2chna1
A:437-590
1b
d2chnb1
B:437-590
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
Hyaluronidase N-terminal domain-like
(15)
Protein domain
:
Glucosaminidase GH84, N-terminal domain
(8)
Bacteroides thetaiotaomicron [TaxId: 818]
(8)
2a
d2chna3
A:4-126
2b
d2chnb3
B:5-126
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
Glucosaminidase GH84, catalytic domain
(8)
Bacteroides thetaiotaomicron [TaxId: 818]
(8)
3a
d2chna2
A:127-436
3b
d2chnb2
B:127-436
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (247 KB)
Header - Asym.Unit
Biol.Unit 1 (121 KB)
Header - Biol.Unit 1
Biol.Unit 2 (122 KB)
Header - Biol.Unit 2
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