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2CH6
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN N-ACETYLGLUCOSAMINE KINASE IN COMPLEX WITH ADP AND GLUCOSE
Authors
:
W. A. Weihofen, M. Berger, H. Chen, W. Saenger, S. Hinderlich
Date
:
13 Mar 06 (Deposition) - 18 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.72
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Transferase, Sugar Kinase, Ribonuclease H Fold, Sugar Kinase/Hsp70/Actin Superfamily
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
W. A. Weihofen, M. Berger, H. Chen, W. Saenger, S. Hinderlich
Structures Of Human N-Acetylglucosamine Kinase In Two Complexes With N-Acetylglucosamine And With Adp/Glucose: Insights Into Substrate Specificity And Regulation.
J. Mol. Biol. V. 364 388 2006
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
GLC
4
Ligand/Ion
ALPHA-D-GLUCOSE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:78 , ASP A:107 , ILE A:124 , GLY A:128 , SER A:129 , ASN A:130 , GLY A:145 , GLY A:147 , ASP A:152
BINDING SITE FOR RESIDUE GLC A1001
2
AC2
SOFTWARE
SER B:76 , GLY B:77 , ASP B:107 , ILE B:124 , GLY B:128 , SER B:129 , ASN B:130 , GLY B:145 , TRP B:146 , GLY B:147 , ASP B:152
BINDING SITE FOR RESIDUE GLC B1001
3
AC3
SOFTWARE
SER C:76 , GLY C:78 , ILE C:124 , GLY C:128 , SER C:129 , ASN C:130 , GLY C:145 , GLY C:147 , ASP C:152
BINDING SITE FOR RESIDUE GLC C1001
4
AC4
SOFTWARE
GLY D:128 , SER D:129 , ASN D:130 , GLY D:145 , GLY D:147 , ASP D:152
BINDING SITE FOR RESIDUE GLC D1001
5
AC5
SOFTWARE
GLY A:12 , THR A:13 , GLY A:126 , THR A:127 , ALA A:156 , ALA A:214 , CYS A:217 , ARG A:218 , GLY A:270 , SER A:271 , LYS A:274 , SER A:275
BINDING SITE FOR RESIDUE ADP A 470
6
AC6
SOFTWARE
GLY B:11 , GLY B:12 , THR B:13 , ARG B:14 , GLY B:126 , THR B:127 , ALA B:156 , ALA B:214 , GLY B:215 , CYS B:217 , ARG B:218 , GLY B:270 , SER B:271 , VAL B:272 , LYS B:274 , SER B:275
BINDING SITE FOR RESIDUE ADP B 470
7
AC7
SOFTWARE
GLY C:12 , THR C:13 , GLY C:126 , THR C:127 , ALA C:156 , ALA C:214 , GLY C:215 , CYS C:217 , ARG C:218 , GLY C:270 , SER C:271 , VAL C:272 , LYS C:274 , SER C:275
BINDING SITE FOR RESIDUE ADP C 470
8
AC8
SOFTWARE
GLY D:126 , THR D:127 , ALA D:156 , ALA D:214 , GLY D:215 , CYS D:217 , ARG D:218 , GLY D:270 , SER D:271 , LYS D:274 , SER D:275
BINDING SITE FOR RESIDUE ADP D 470
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SAPs(SNPs)/Variants
(2, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029763 (W38R, chain A/D, )
2: VAR_029764 (A60V, chain A/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029763
W
38
R
NAGK_HUMAN
Polymorphism
17856147
A/D
W
38
R
2
UniProt
VAR_029764
A
60
V
NAGK_HUMAN
Polymorphism
17849984
A/C/D
A
60
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(10, 40)
Info
All Exons
Exon 1.3d (A:2-10 | B:6-10 | C:2-10 | D:2-10)
Exon 1.3s (A:10-38 | B:10-37 (gaps) | C:10-36...)
Exon 1.3w (A:39-71 | B:40-71 (gaps) | C:41-71...)
Exon 1.3z (A:72-119 | B:72-119 (gaps) | C:72-...)
Exon 1.4e (A:119-156 | B:119-156 | C:119-156 ...)
Exon 1.4i (A:156-193 | B:156-193 | C:156-193 ...)
Exon 1.5e (A:194-223 | B:194-223 | C:194-223 ...)
Exon 1.5m (A:223-255 | B:223-255 | C:223-255 ...)
Exon 1.6c (A:256-282 | B:256-282 | C:256-282 ...)
Exon 1.7j (A:282-344 | B:282-344 (gaps) | C:2...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.3d
02: Boundary 1.3d/1.3s
03: Boundary 1.3s/1.3w
04: Boundary 1.3w/1.3z
05: Boundary 1.3z/1.4e
06: Boundary 1.4e/1.4i
07: Boundary 1.4i/1.5e
08: Boundary 1.5e/1.5m
09: Boundary 1.5m/1.6c
10: Boundary 1.6c/1.7j
11: Boundary 1.7j/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3d
ENST00000244204
3d
ENSE00001893308
chr2:
71295431-71295842
412
NAGK_HUMAN
1-10
10
4
A:2-10
B:6-10
C:2-10
D:2-10
9
5
9
9
1.3s
ENST00000244204
3s
ENSE00001643647
chr2:
71297632-71297716
85
NAGK_HUMAN
10-38
29
4
A:10-38
B:10-37 (gaps)
C:10-36
D:10-38
29
28
27
29
1.3w
ENST00000244204
3w
ENSE00001657058
chr2:
71297871-71297969
99
NAGK_HUMAN
39-71
33
4
A:39-71
B:40-71 (gaps)
C:41-71
D:39-71
33
32
31
33
1.3z
ENST00000244204
3z
ENSE00001619904
chr2:
71298816-71298957
142
NAGK_HUMAN
72-119
48
4
A:72-119
B:72-119 (gaps)
C:72-119 (gaps)
D:72-119
48
48
48
48
1.4e
ENST00000244204
4e
ENSE00001658342
chr2:
71299771-71299881
111
NAGK_HUMAN
119-156
38
4
A:119-156
B:119-156
C:119-156
D:119-156
38
38
38
38
1.4i
ENST00000244204
4i
ENSE00002143950
chr2:
71300612-71300724
113
NAGK_HUMAN
156-193
38
4
A:156-193
B:156-193
C:156-193
D:156-193
38
38
38
38
1.5e
ENST00000244204
5e
ENSE00001787623
chr2:
71302685-71302772
88
NAGK_HUMAN
194-223
30
4
A:194-223
B:194-223
C:194-223
D:194-223
30
30
30
30
1.5m
ENST00000244204
5m
ENSE00001805341
chr2:
71303734-71303831
98
NAGK_HUMAN
223-255
33
4
A:223-255
B:223-255
C:223-255
D:223-255
33
33
33
33
1.6c
ENST00000244204
6c
ENSE00001721052
chr2:
71304688-71304766
79
NAGK_HUMAN
256-282
27
4
A:256-282
B:256-282
C:256-282
D:256-282
27
27
27
27
1.7j
ENST00000244204
7j
ENSE00001850708
chr2:
71305448-71305998
551
NAGK_HUMAN
282-344
63
4
A:282-344
B:282-344 (gaps)
C:282-344
D:282-344
63
63
63
63
[
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2ch6a1 (A:118-344)
1b: SCOP_d2ch6b1 (B:118-344)
1c: SCOP_d2ch6b2 (B:6-117)
1d: SCOP_d2ch6c1 (C:118-344)
1e: SCOP_d2ch6c2 (C:2-117)
1f: SCOP_d2ch6d1 (D:118-344)
1g: SCOP_d2ch6d2 (D:2-117)
1h: SCOP_d2ch6a2 (A:2-117)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
BadF/BadG/BcrA/BcrD-like
(6)
Protein domain
:
N-acetylglucosamine kinase, NAGK
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2ch6a1
A:118-344
1b
d2ch6b1
B:118-344
1c
d2ch6b2
B:6-117
1d
d2ch6c1
C:118-344
1e
d2ch6c2
C:2-117
1f
d2ch6d1
D:118-344
1g
d2ch6d2
D:2-117
1h
d2ch6a2
A:2-117
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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