PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2CH2
Asym. Unit
Info
Asym.Unit (254 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (126 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE ANOPHELES GAMBIAE 3-HYDROXYKYNURENINE TRANSAMINASE IN COMPLEX WITH INHIBITOR
Authors
:
F. Rossi, S. Garavaglia, G. B. Giovenzana, B. Arca, J. Li, M. Rizzi
Date
:
10 Mar 06 (Deposition) - 28 Mar 06 (Release) - 17 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Plp-Enzyme, Kynurenine Pathway, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Rossi, S. Garavaglia, G. B. Giovenzana, B. Arca, J. Li, M. Rizzi
Crystal Structure Of The Anopheles Gambiae 3- Hydroxykynurenine Transaminase
Proc. Natl. Acad. Sci. Usa V. 103 5711 2006
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: 4-(2-AMINOPHENYL)-4-OXOBUTANOIC AC... (KY1a)
1b: 4-(2-AMINOPHENYL)-4-OXOBUTANOIC AC... (KY1b)
1c: 4-(2-AMINOPHENYL)-4-OXOBUTANOIC AC... (KY1c)
1d: 4-(2-AMINOPHENYL)-4-OXOBUTANOIC AC... (KY1d)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
KY1
4
Ligand/Ion
4-(2-AMINOPHENYL)-4-OXOBUTANOIC ACID
2
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO B:24 , GLY B:25 , SER B:154 , LYS B:205 , GLN B:344 , ARG B:356 , PLP B:1390 , SER C:43 , ASN C:44 , TYR C:256 , THR C:259
BINDING SITE FOR RESIDUE KY1 C1390
2
AC2
SOFTWARE
TYR B:256 , THR B:259 , KY1 B:1391 , SER C:77 , ALA C:78 , HIS C:79 , TRP C:104 , GLY C:152 , SER C:154 , ASP C:179 , VAL C:181 , ALA C:182 , GLN C:204 , LYS C:205
BINDING SITE FOR RESIDUE PLP C1391
3
AC3
SOFTWARE
GLY A:25 , SER A:154 , LYS A:205 , GLN A:344 , LEU A:347 , ARG A:356 , PLP A:1390 , HOH A:2006 , SER D:43 , ASN D:44 , PHE D:45 , TYR D:256 , HOH D:2019
BINDING SITE FOR RESIDUE KY1 D1390
4
AC4
SOFTWARE
TYR A:256 , THR A:259 , SER D:77 , ALA D:78 , HIS D:79 , TRP D:104 , GLY D:152 , SER D:154 , ASP D:179 , VAL D:181 , ALA D:182 , GLN D:204 , LYS D:205 , KY1 D:1392
BINDING SITE FOR RESIDUE PLP D1391
5
AC5
SOFTWARE
SER A:77 , ALA A:78 , HIS A:79 , TRP A:104 , GLY A:152 , SER A:154 , ASP A:179 , VAL A:181 , ALA A:182 , GLN A:204 , LYS A:205 , TYR D:256 , THR D:259 , KY1 D:1390
BINDING SITE FOR RESIDUE PLP A1390
6
AC6
SOFTWARE
SER B:77 , ALA B:78 , HIS B:79 , TRP B:104 , GLY B:152 , SER B:154 , ASP B:179 , VAL B:181 , ALA B:182 , GLN B:204 , LYS B:205 , TYR C:256 , THR C:259 , KY1 C:1390
BINDING SITE FOR RESIDUE PLP B1390
7
AC7
SOFTWARE
SER B:43 , ASN B:44 , PHE B:45 , TYR B:256 , THR B:259 , GLY C:25 , TRP C:104 , LYS C:205 , GLN C:344 , LEU C:347 , ARG C:356 , PLP C:1391
BINDING SITE FOR RESIDUE KY1 B1391
8
AC8
SOFTWARE
SER A:43 , ASN A:44 , TYR A:256 , PRO D:24 , GLY D:25 , TRP D:104 , SER D:154 , GLN D:344 , ARG D:356 , PLP D:1391
BINDING SITE FOR RESIDUE KY1 D1392
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2ch2a_ (A:)
1b: SCOP_d2ch2b_ (B:)
1c: SCOP_d2ch2c_ (C:)
1d: SCOP_d2ch2d_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
African malaria mosquito (Anopheles gambiae) [TaxId: 7165]
(2)
1a
d2ch2a_
A:
1b
d2ch2b_
B:
1c
d2ch2c_
C:
1d
d2ch2d_
D:
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2ch2A02 (A:30-278)
1b: CATH_2ch2B02 (B:30-278)
1c: CATH_2ch2C02 (C:30-278)
1d: CATH_2ch2D02 (D:30-278)
2a: CATH_2ch2A01 (A:3-29,A:279-389)
2b: CATH_2ch2B01 (B:3-29,B:279-389)
2c: CATH_2ch2C01 (C:3-29,C:279-389)
2d: CATH_2ch2D01 (D:3-29,D:279-389)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
African malaria mosquito (Anopheles gambiae)
(1)
1a
2ch2A02
A:30-278
1b
2ch2B02
B:30-278
1c
2ch2C02
C:30-278
1d
2ch2D02
D:30-278
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
African malaria mosquito (Anopheles gambiae)
(1)
2a
2ch2A01
A:3-29,A:279-389
2b
2ch2B01
B:3-29,B:279-389
2c
2ch2C01
C:3-29,C:279-389
2d
2ch2D01
D:3-29,D:279-389
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (254 KB)
Header - Asym.Unit
Biol.Unit 1 (126 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2CH2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help