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2CG1
Biol. Unit 1
Info
Asym.Unit (205 KB)
Biol.Unit 1 (389 KB)
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(1)
Title
:
AGAO IN COMPLEX WITH WC11B (RU-WIRE INHIBITOR, 11-CARBON LINKER, DATA SET B)
Authors
:
D. B. Langley, A. P. Duff, H. C. Freeman, J. M. Guss, G. A. Juda, D. M. Dooley, S. M. Contakes, N. W. Halpern-Manners, A. R. Dunn, H. B. Gray
Date
:
27 Feb 06 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Amine Oxidase, Arthrobacter Globiformis, Copper, Copper Containing, Oxidoreductase, Tpq, Cuao, Quinone, Ruthenium Diimine Wires, Competitive Inhibition, Metal-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. B. Langley, D. E. Brown, L. E. Cheruzel, S. M. Contakes, A. P. Duff, K. M. Hilmer, D. M. Dooley, H. B. Gray, J. M. Guss, H. C. Freeman
Enantiomer-Specific Binding Of Ruthenium(Ii) Molecular Wires By The Amine Oxidase Of Arthrobacter Globiformis.
J. Am. Chem. Soc. V. 130 8069 2008
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: RUTHENIUM WIRE, 11 CARBON LINKER (11Ra)
2a: COPPER (II) ION (CUa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SODIUM ION (NAa)
5a: SULFATE ION (SO4a)
6a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
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No.
Name
Count
Type
Full Name
1
11R
2
Ligand/Ion
RUTHENIUM WIRE, 11 CARBON LINKER
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
NA
-1
Ligand/Ion
SODIUM ION
5
SO4
2
Ligand/Ion
SULFATE ION
6
TPQ
2
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2262 , HOH A:2296
BINDING SITE FOR RESIDUE CU A1629
2
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2301
BINDING SITE FOR RESIDUE NA A1630
3
AC3
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , HIS A:345 , GLY A:350 , ARG A:367 , HOH A:2264 , HOH A:2454 , HOH A:2455
BINDING SITE FOR RESIDUE SO4 A1632
4
AC4
SOFTWARE
PHE A:105 , ALA A:135 , PRO A:136 , LEU A:137 , TYR A:296 , TYR A:302 , TYR A:307 , LEU A:358 , GLY A:361 , ASN A:363 , THR A:378 , GLY A:380 , ASN A:381 , TPQ A:382
BINDING SITE FOR RESIDUE 11R A1631
5
AC5
SOFTWARE
ARG A:532 , ARG A:533 , THR A:554 , PHE A:557 , HIS A:561 , SER A:562 , GLY A:563 , GLY A:564 , ALA A:565 , HOH A:2399
BINDING SITE FOR RESIDUE GOL A1633
6
AC6
SOFTWARE
ASN A:126 , ASP A:161 , VAL A:197 , ALA A:199 , HOH A:2456 , HOH A:2457
BINDING SITE FOR RESIDUE GOL A1634
7
AC7
SOFTWARE
LEU A:590 , ASP A:605 , LYS A:610 , HOH A:2458 , HOH A:2459
BINDING SITE FOR RESIDUE GOL A1635
8
AC8
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A1636
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2cg1a1 (A:212-628)
2a: SCOP_d2cg1a2 (A:9-96)
2b: SCOP_d2cg1a3 (A:97-211)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d2cg1a1
A:212-628
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d2cg1a2
A:9-96
2b
d2cg1a3
A:97-211
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2cg1A02 (A:102-203)
1b: CATH_2cg1A01 (A:9-95)
2a: CATH_2cg1A03 (A:204-627)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
2cg1A02
A:102-203
1b
2cg1A01
A:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
2cg1A03
A:204-627
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (205 KB)
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Biol.Unit 1 (389 KB)
Header - Biol.Unit 1
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