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2CG1
Asym. Unit
Info
Asym.Unit (205 KB)
Biol.Unit 1 (389 KB)
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(1)
Title
:
AGAO IN COMPLEX WITH WC11B (RU-WIRE INHIBITOR, 11-CARBON LINKER, DATA SET B)
Authors
:
D. B. Langley, A. P. Duff, H. C. Freeman, J. M. Guss, G. A. Juda, D. M. Dooley, S. M. Contakes, N. W. Halpern-Manners, A. R. Dunn, H. B. Gray
Date
:
27 Feb 06 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Amine Oxidase, Arthrobacter Globiformis, Copper, Copper Containing, Oxidoreductase, Tpq, Cuao, Quinone, Ruthenium Diimine Wires, Competitive Inhibition, Metal-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. B. Langley, D. E. Brown, L. E. Cheruzel, S. M. Contakes, A. P. Duff, K. M. Hilmer, D. M. Dooley, H. B. Gray, J. M. Guss, H. C. Freeman
Enantiomer-Specific Binding Of Ruthenium(Ii) Molecular Wires By The Amine Oxidase Of Arthrobacter Globiformis.
J. Am. Chem. Soc. V. 130 8069 2008
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Hetero Components
(6, 9)
Info
All Hetero Components
1a: RUTHENIUM WIRE, 11 CARBON LINKER (11Ra)
2a: COPPER (II) ION (CUa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SODIUM ION (NAa)
5a: SULFATE ION (SO4a)
6a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
11R
1
Ligand/Ion
RUTHENIUM WIRE, 11 CARBON LINKER
2
CU
1
Ligand/Ion
COPPER (II) ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
NA
1
Ligand/Ion
SODIUM ION
5
SO4
1
Ligand/Ion
SULFATE ION
6
TPQ
1
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2262 , HOH A:2296
BINDING SITE FOR RESIDUE CU A1629
2
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2301
BINDING SITE FOR RESIDUE NA A1630
3
AC3
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , HIS A:345 , GLY A:350 , ARG A:367 , HOH A:2264 , HOH A:2454 , HOH A:2455
BINDING SITE FOR RESIDUE SO4 A1632
4
AC4
SOFTWARE
PHE A:105 , ALA A:135 , PRO A:136 , LEU A:137 , TYR A:296 , TYR A:302 , TYR A:307 , LEU A:358 , GLY A:361 , ASN A:363 , THR A:378 , GLY A:380 , ASN A:381 , TPQ A:382
BINDING SITE FOR RESIDUE 11R A1631
5
AC5
SOFTWARE
ARG A:532 , ARG A:533 , THR A:554 , PHE A:557 , HIS A:561 , SER A:562 , GLY A:563 , GLY A:564 , ALA A:565 , HOH A:2399
BINDING SITE FOR RESIDUE GOL A1633
6
AC6
SOFTWARE
ASN A:126 , ASP A:161 , VAL A:197 , ALA A:199 , HOH A:2456 , HOH A:2457
BINDING SITE FOR RESIDUE GOL A1634
7
AC7
SOFTWARE
LEU A:590 , ASP A:605 , LYS A:610 , HOH A:2458 , HOH A:2459
BINDING SITE FOR RESIDUE GOL A1635
8
AC8
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A1636
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
1
A:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
1
A:587-600
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2cg1a1 (A:212-628)
2a: SCOP_d2cg1a2 (A:9-96)
2b: SCOP_d2cg1a3 (A:97-211)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d2cg1a1
A:212-628
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d2cg1a2
A:9-96
2b
d2cg1a3
A:97-211
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2cg1A02 (A:102-203)
1b: CATH_2cg1A01 (A:9-95)
2a: CATH_2cg1A03 (A:204-627)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
2cg1A02
A:102-203
1b
2cg1A01
A:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
2cg1A03
A:204-627
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (205 KB)
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