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2CFK
Asym. Unit
Info
Asym.Unit (208 KB)
Biol.Unit 1 (394 KB)
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(1)
Title
:
AGAO IN COMPLEX WITH WC5 (RU-WIRE INHIBITOR, 5-CARBON LINKER)
Authors
:
D. B. Langley, A. P. Duff, H. C. Freeman, J. M. Guss, G. A. Juda, D. M. Dooley, S. M. Contakes, N. W. Halpern-Manners, A. R. Dunn, H. B. Gray
Date
:
21 Feb 06 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Amine Oxidase, Arthrobacter Globiformis, Copper, Copper Containing, Oxidoreductase, Tpq, Cuao, Quinone, Ruthenium Diimine Wires, Competitive Inhibition, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Langley, D. E. Brown, L. E. Cheruzel, S. M. Contakes, A. P. Duff, K. M. Hilmer, D. M. Dooley, H. B. Gray, J. M. Guss, H. C. Freeman
Enantiomer-Specific Binding Of Ruthenium(Ii) Molecular Wires By The Amine Oxidase Of Arthrobacter Globiformis.
J. Am. Chem. Soc. V. 130 8069 2008
[
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Hetero Components
(7, 15)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: SODIUM ION (NAa)
4a: RUTHENIUM WIRE, 5 CARBON LINKER (R5Aa)
5a: RUTHENIUM WIRE WC5 (R5Ba)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
7a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
1
Ligand/Ion
COPPER (II) ION
2
GOL
7
Ligand/Ion
GLYCEROL
3
NA
1
Ligand/Ion
SODIUM ION
4
R5A
1
Ligand/Ion
RUTHENIUM WIRE, 5 CARBON LINKER
5
R5B
1
Ligand/Ion
RUTHENIUM WIRE WC5
6
SO4
3
Ligand/Ion
SULFATE ION
7
TPQ
1
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2269 , HOH A:2271
BINDING SITE FOR RESIDUE CU A1629
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2275
BINDING SITE FOR RESIDUE NA A1630
03
AC3
SOFTWARE
THR A:233 , GLY A:234 , HOH A:2413
BINDING SITE FOR RESIDUE SO4 A1633
04
AC4
SOFTWARE
ARG A:545 , ASP A:576 , HOH A:2380 , HOH A:2414
BINDING SITE FOR RESIDUE SO4 A1634
05
AC5
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , HIS A:345 , ARG A:367 , GOL A:1640 , HOH A:2423 , HOH A:2424 , HOH A:2425
BINDING SITE FOR RESIDUE SO4 A1642
06
AC6
SOFTWARE
GLU A:102 , PHE A:105 , ALA A:135 , PRO A:136 , LEU A:137 , TRP A:168 , TYR A:296 , TYR A:302 , TYR A:307 , LEU A:358 , THR A:378 , GLY A:380 , ASN A:381 , TPQ A:382 , R5B A:1632
BINDING SITE FOR RESIDUE R5A A1631
07
AC7
SOFTWARE
GLU A:102 , PHE A:105 , GLU A:106 , ALA A:135 , PRO A:136 , LEU A:137 , TRP A:168 , TYR A:296 , TYR A:302 , ARG A:336 , LEU A:358 , GLY A:380 , ASN A:381 , TPQ A:382 , R5A A:1631
BINDING SITE FOR RESIDUE R5B A1632
08
AC8
SOFTWARE
ARG A:532 , ARG A:533 , THR A:554 , PHE A:557 , HIS A:561 , SER A:562 , GLY A:563 , GLY A:564 , ALA A:565 , HOH A:2363
BINDING SITE FOR RESIDUE GOL A1635
09
AC9
SOFTWARE
ASN A:126 , VAL A:159 , ASP A:161 , VAL A:197 , ALA A:199 , HOH A:2415 , HOH A:2416
BINDING SITE FOR RESIDUE GOL A1636
10
BC1
SOFTWARE
ASP A:605 , LYS A:610 , ARG A:612 , HOH A:2417
BINDING SITE FOR RESIDUE GOL A1637
11
BC2
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A1638
12
BC3
SOFTWARE
LEU A:209 , THR A:210 , SER A:620 , PRO A:621 , VAL A:622 , LEU A:623 , HOH A:2418
BINDING SITE FOR RESIDUE GOL A1639
13
BC4
SOFTWARE
GLU A:347 , ARG A:370 , LYS A:401 , SO4 A:1642 , HOH A:2225 , HOH A:2419 , HOH A:2420 , HOH A:2424
BINDING SITE FOR RESIDUE GOL A1640
14
BC5
SOFTWARE
ASN A:368 , TYR A:391 , ASP A:393 , LYS A:610 , HOH A:2241 , HOH A:2249 , HOH A:2399 , HOH A:2421 , HOH A:2422
BINDING SITE FOR RESIDUE GOL A1641
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
1
A:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
1
A:587-600
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2cfka1 (A:212-628)
2a: SCOP_d2cfka2 (A:9-96)
2b: SCOP_d2cfka3 (A:97-211)
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Folds
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(
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)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d2cfka1
A:212-628
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d2cfka2
A:9-96
2b
d2cfka3
A:97-211
[
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]
CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2cfkA02 (A:102-203)
1b: CATH_2cfkA01 (A:9-95)
2a: CATH_2cfkA03 (A:204-627)
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
2cfkA02
A:102-203
1b
2cfkA01
A:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
2cfkA03
A:204-627
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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