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2CFH
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
STRUCTURE OF THE BET3-TPC6B CORE OF TRAPP
Authors
:
D. Kummel, J. J. Muller, Y. Roske, N. Henke, U. Heinemann
Date
:
21 Feb 06 (Deposition) - 12 Jul 06 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein Transport, Trapp Complex, Bet3, Tpc6, Vesicle Tethering, Transport, Er-Golgi Transport, Endoplasmic Reticulum
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Kummel, J. J. Muller, Y. Roske, N. Henke, U. Heinemann
Structure Of The Bet3-Tpc6B Core Of Trapp: Two Tpc6 Paralogs Form Trimeric Complexes With Bet3 And Mum2.
J. Mol. Biol. V. 361 22 2006
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
2a: PALMITIC ACID (PLMa)
2b: PALMITIC ACID (PLMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
PLM
2
Ligand/Ion
PALMITIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:56 , GLY A:66 , ARG A:67 , CYS A:68 , LEU A:131
BINDING SITE FOR RESIDUE PLM A1068
2
AC2
SOFTWARE
ILE B:56 , GLY B:66 , ARG B:67 , CYS B:68 , LEU B:131 , LEU B:139 , LEU D:6
BINDING SITE FOR RESIDUE PLM B1068
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(10, 20)
Info
All Exons
Exon 1.1c (C:2-27 | D:2-27)
Exon 1.2a (C:28-50 | D:28-50)
Exon 1.2c (C:50-89 | D:50-89)
Exon 1.3 (C:90-117 (gaps) | D:90-117 (gaps))
Exon 1.4 (C:118-149 | D:118-149)
Exon 1.5b (C:149-158 | D:149-158)
Exon 2.2b (A:15-47 | B:15-47)
Exon 2.3a (A:47-80 | B:47-80)
Exon 2.5b (A:81-141 | B:81-141)
Exon 2.5g (A:142-176 | B:142-176)
View:
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All Exon Boundaries
01: Boundary -/1.1c
02: Boundary 1.1c/1.2a
03: Boundary 1.2a/1.2c
04: Boundary 1.2c/1.3
05: Boundary 1.3/1.4
06: Boundary 1.4/1.5b
07: Boundary 1.5b/-
08: Boundary 2.1c/2.2b
09: Boundary 2.2b/2.3a
10: Boundary 2.3a/2.5b
11: Boundary 2.5b/2.5g
12: Boundary 2.5g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000330149
1c
ENSE00001846910
chr14:
39639526-39639219
308
TPC6B_HUMAN
1-27
27
2
C:2-27
D:2-27
26
26
1.2a
ENST00000330149
2a
ENSE00001298290
chr14:
39628754-39628687
68
TPC6B_HUMAN
28-50
23
2
C:28-50
D:28-50
23
23
1.2c
ENST00000330149
2c
ENSE00001318696
chr14:
39627606-39627489
118
TPC6B_HUMAN
50-89
40
2
C:50-89
D:50-89
40
40
1.3
ENST00000330149
3
ENSE00001334158
chr14:
39623498-39623415
84
TPC6B_HUMAN
90-117
28
2
C:90-117 (gaps)
D:90-117 (gaps)
28
28
1.4
ENST00000330149
4
ENSE00001297356
chr14:
39621043-39620950
94
TPC6B_HUMAN
118-149
32
2
C:118-149
D:118-149
32
32
1.5b
ENST00000330149
5b
ENSE00001869808
chr14:
39619585-39617016
2570
TPC6B_HUMAN
149-158
10
2
C:149-158
D:149-158
10
10
2.1c
ENST00000373166
1c
ENSE00001889875
chr1:
36615070-36614938
133
TPPC3_HUMAN
1-14
14
0
-
-
2.2b
ENST00000373166
2b
ENSE00001718673
chr1:
36605767-36605670
98
TPPC3_HUMAN
15-47
33
2
A:15-47
B:15-47
33
33
2.3a
ENST00000373166
3a
ENSE00000766274
chr1:
36605420-36605321
100
TPPC3_HUMAN
47-80
34
2
A:47-80
B:47-80
34
34
2.5b
ENST00000373166
5b
ENSE00000766275
chr1:
36603579-36603397
183
TPPC3_HUMAN
81-141
61
2
A:81-141
B:81-141
61
61
2.5g
ENST00000373166
5g
ENSE00001459692
chr1:
36602923-36602173
751
TPPC3_HUMAN
142-180
39
2
A:142-176
B:142-176
35
35
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2cfha_ (A:)
1b: SCOP_d2cfhb_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ligand-binding domain in the NO signalling and Golgi transport
(29)
Superfamily
:
Ligand-binding domain in the NO signalling and Golgi transport
(29)
Family
:
TRAPP components
(11)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2cfha_
A:
1b
d2cfhb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2cfhA00 (A:15-176)
1b: CATH_2cfhB00 (B:15-176)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Muramoyl-pentapeptide Carboxypeptidase; domain 2
(24)
Homologous Superfamily
:
Trafficking protein particle complex subunit 3
(11)
Human (Homo sapiens)
(2)
1a
2cfhA00
A:15-176
1b
2cfhB00
B:15-176
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Pfam Domains
(0, 0)
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Asym.Unit (113 KB)
Header - Asym.Unit
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