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2CFG
Asym. Unit
Info
Asym.Unit (394 KB)
Biol.Unit 1 (384 KB)
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(1)
Title
:
AGAO IN COMPLEX WITH WC4D3 (RU-WIRE INHIBITOR, 4-CARBON LINKER, DELTA ENANTIOMER, DATA SET 3)
Authors
:
D. B. Langley, A. P. Duff, H. C. Freeman, J. M. Guss, G. A. Juda, D. M. Dooley, S. M. Contakes, N. W. Halpern-Manners, A. R. Dunn, H. B. Gray
Date
:
21 Feb 06 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Amine Oxidase, Arthrobacter Globiformis, Copper, Copper Containing, Oxidoreductase, Tpq, Quinone, Ruthenium Diimine Wires, Competitive Inhibition, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Langley, D. E. Brown, L. E. Cheruzel, S. M. Contakes, A. P. Duff, K. M. Hilmer, D. M. Dooley, H. B. Gray, J. M. Guss, H. C. Freeman
Enantiomer-Specific Binding Of Ruthenium(Ii) Molecular Wires By The Amine Oxidase Of Arthrobacter Globiformis.
J. Am. Chem. Soc. V. 130 8069 2008
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Hetero Components
(6, 21)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: BIS[1H,1'H-2,2'-BIPYRIDINATO(2-)-K... (R4Aa)
4b: BIS[1H,1'H-2,2'-BIPYRIDINATO(2-)-K... (R4Ab)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
6a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
6b: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
2
Ligand/Ion
COPPER (II) ION
2
GOL
11
Ligand/Ion
GLYCEROL
3
NA
2
Ligand/Ion
SODIUM ION
4
R4A
2
Ligand/Ion
BIS[1H,1'H-2,2'-BIPYRIDINATO(2-)-KAPPA~2~N~1~,N~1'~]{3-[4-(1,10-DIHYDRO-1,10-PHENANTHROLIN-4-YL-KAPPA~2~N~1~,N~10~)BUTOXY]-N,N-DIMETHYLANILINATO(2-)}RUTHENIUM
5
SO4
2
Ligand/Ion
SULFATE ION
6
TPQ
2
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2198 , HOH A:2229
BINDING SITE FOR RESIDUE CU A1628
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2235
BINDING SITE FOR RESIDUE NA A1629
03
AC3
SOFTWARE
GLY A:350 , ARG A:367 , ASP B:316 , CYS B:317 , LEU B:318 , HIS B:345 , GOL B:1638 , HOH B:2231 , HOH B:2254 , HOH B:2424 , HOH B:2425 , HOH B:2426
BINDING SITE FOR RESIDUE SO4 B1628
04
AC4
SOFTWARE
HIS B:431 , HIS B:433 , HIS B:592 , HOH B:2252 , HOH B:2282
BINDING SITE FOR RESIDUE CU B1630
05
AC5
SOFTWARE
ASP B:440 , MET B:441 , ASP B:581 , ILE B:582 , HOH B:2287
BINDING SITE FOR RESIDUE NA B1631
06
AC6
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , HIS A:345 , HOH A:2200 , GLY B:350 , ARG B:367 , HOH B:2428 , HOH B:2429 , HOH B:2430
BINDING SITE FOR RESIDUE SO4 B1633
07
AC7
SOFTWARE
GLU A:102 , PHE A:105 , ALA A:135 , PRO A:136 , LEU A:137 , TRP A:168 , TYR A:296 , TYR A:302 , TYR A:307 , GLY A:380 , ASN A:381 , TPQ A:382 , PHE A:407 , SER B:356 , ASP B:357 , LEU B:358
BINDING SITE FOR RESIDUE R4A A1630
08
AC8
SOFTWARE
SER A:356 , ASP A:357 , LEU A:358 , GLU B:102 , PHE B:105 , ALA B:135 , PRO B:136 , LEU B:137 , TRP B:168 , TYR B:296 , TYR B:302 , TYR B:307 , GLY B:380 , ASN B:381 , TPQ B:382 , PHE B:407
BINDING SITE FOR RESIDUE R4A B1632
09
AC9
SOFTWARE
ASN A:126 , ASP A:161 , VAL A:197 , ALA A:199 , HOH A:2361 , HOH A:2362 , HOH A:2363
BINDING SITE FOR RESIDUE GOL A1631
10
BC1
SOFTWARE
LEU A:590 , ASP A:605 , THR A:606 , HOH A:2341 , LYS B:610 , ARG B:612
BINDING SITE FOR RESIDUE GOL A1632
11
BC2
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A1633
12
BC3
SOFTWARE
ASN A:368 , TYR A:391 , ASP A:393 , LYS A:610 , HOH A:2195 , HOH A:2205 , HOH A:2364 , HOH A:2365 , HOH B:2408
BINDING SITE FOR RESIDUE GOL A1634
13
BC4
SOFTWARE
GLU A:347 , ARG A:370 , LYS A:401 , HOH A:2201 , HOH A:2208 , TRP B:349 , GLY B:350 , HOH B:2427
BINDING SITE FOR RESIDUE GOL B1629
14
BC5
SOFTWARE
ARG B:532 , ARG B:533 , THR B:554 , PHE B:557 , HIS B:561 , SER B:562 , GLY B:563 , GLY B:564 , ALA B:565 , HOH B:2374
BINDING SITE FOR RESIDUE GOL B1634
15
BC6
SOFTWARE
ASN B:126 , ASP B:161 , VAL B:197 , ALA B:199 , HOH B:2431 , HOH B:2432 , HOH B:2433
BINDING SITE FOR RESIDUE GOL B1635
16
BC7
SOFTWARE
ARG A:612 , LEU B:590 , ASP B:605 , THR B:606 , HOH B:2434
BINDING SITE FOR RESIDUE GOL B1636
17
BC8
SOFTWARE
ASP B:444 , GLY B:445 , PHE B:446 , THR B:447 , ASN B:499
BINDING SITE FOR RESIDUE GOL B1637
18
BC9
SOFTWARE
TRP A:349 , GLY A:350 , GLU B:347 , ARG B:370 , LYS B:401 , SO4 B:1628 , HOH B:2255 , HOH B:2262 , HOH B:2435
BINDING SITE FOR RESIDUE GOL B1638
19
CC1
SOFTWARE
ASN B:368 , TYR B:391 , ASP B:393 , LYS B:610 , HOH B:2246 , HOH B:2260 , HOH B:2436 , HOH B:2437 , HOH B:2438
BINDING SITE FOR RESIDUE GOL B1639
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384,B:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600,B:587-600)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
B:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
B:587-600
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2cfga1 (A:212-627)
1b: SCOP_d2cfgb1 (B:212-627)
2a: SCOP_d2cfga2 (A:9-96)
2b: SCOP_d2cfga3 (A:97-211)
2c: SCOP_d2cfgb2 (B:9-96)
2d: SCOP_d2cfgb3 (B:97-211)
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Classes
(
)
(
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Folds
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(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d2cfga1
A:212-627
1b
d2cfgb1
B:212-627
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d2cfga2
A:9-96
2b
d2cfga3
A:97-211
2c
d2cfgb2
B:9-96
2d
d2cfgb3
B:97-211
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2cfgA02 (A:102-203)
1b: CATH_2cfgB02 (B:102-203)
1c: CATH_2cfgA01 (A:9-95)
1d: CATH_2cfgB01 (B:9-95)
2a: CATH_2cfgA03 (A:204-627)
2b: CATH_2cfgB03 (B:204-627)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
2cfgA02
A:102-203
1b
2cfgB02
B:102-203
1c
2cfgA01
A:9-95
1d
2cfgB01
B:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
2cfgA03
A:204-627
2b
2cfgB03
B:204-627
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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