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2CEV
Biol. Unit 1
Info
Asym.Unit (295 KB)
Biol.Unit 1 (288 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (289 KB)
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(1)
Title
:
ARGINASE FROM BACILLUS CALDEVELOX, NATIVE STRUCTURE AT PH 8.5
Authors
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Date
:
10 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (2x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: D,E,F (2x)
Keywords
:
Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: GUANIDINE (GAIa)
1b: GUANIDINE (GAIb)
1c: GUANIDINE (GAIc)
1d: GUANIDINE (GAId)
1e: GUANIDINE (GAIe)
1f: GUANIDINE (GAIf)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAI
6
Ligand/Ion
GUANIDINE
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: MNA (AUTHOR)
11: MNB (AUTHOR)
12: MNC (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226 , MN A:302 , HOH A:1004 , HOH A:1005
BINDING SITE FOR RESIDUE MN A 301
02
AC2
SOFTWARE
ASP A:122 , HIS A:124 , ASP A:226 , ASP A:228 , MN A:301 , HOH A:1004
BINDING SITE FOR RESIDUE MN A 302
03
AC3
SOFTWARE
HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226 , MN B:302 , HOH B:1003 , HOH B:1004
BINDING SITE FOR RESIDUE MN B 301
04
AC4
SOFTWARE
ASP B:122 , HIS B:124 , ASP B:226 , ASP B:228 , MN B:301 , HOH B:1003
BINDING SITE FOR RESIDUE MN B 302
05
AC5
SOFTWARE
HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226 , MN C:302 , HOH C:303 , HOH C:304
BINDING SITE FOR RESIDUE MN C 301
06
AC6
SOFTWARE
ASP C:122 , HIS C:124 , ASP C:226 , ASP C:228 , MN C:301 , HOH C:303
BINDING SITE FOR RESIDUE MN C 302
07
BC4
SOFTWARE
HIS A:252 , GLU A:256 , LEU A:298 , HOH A:1070 , HIS B:196 , ASP B:199 , HOH B:1005
BINDING SITE FOR RESIDUE GAI A 1001
08
BC5
SOFTWARE
HIS B:252 , GLU B:256 , HIS C:196 , ASP C:199 , HOH C:307
BINDING SITE FOR RESIDUE GAI B 1002
09
BC6
SOFTWARE
HIS A:196 , ASP A:199 , HOH A:1033 , HOH A:1073 , HIS C:252 , GLU C:256 , LEU C:298
BINDING SITE FOR RESIDUE GAI A 1003
10
MNA
AUTHOR
HIS A:99 , ASP A:122 , HIS A:124 , ASP A:126 , ASP A:226 , ASP A:228
SITE COMPRISES TWO MN ATOMS, RESIDUES 301 AND 302. MN 301 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, A BRIDGING WATER HOH1 AND A TERMINAL WATER HOH MN 302 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH1
11
MNB
AUTHOR
HIS B:99 , ASP B:122 , HIS B:124 , ASP B:126 , ASP B:226 , ASP B:228
SITE COMPRISES TWO MN ATOMS, RESIDUES 301 AND 302. MN 301 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, A BRIDGING WATER HOH2 AND A TERMINAL WATER HOH MN 302 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH2
12
MNC
AUTHOR
HIS C:99 , ASP C:122 , HIS C:124 , ASP C:126 , ASP C:226 , ASP C:228
SITE COMPRISES TWO MN ATOMS, RESIDUES 301 AND 302. MN 301 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, A BRIDGING WATER HOH3 AND A TERMINAL WATER HOH MN 302 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH3
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:224-245,B:224-245,C:224-245)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI_BACCD
224-245
6
A:224-245
B:224-245
C:224-245
-
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2ceva_ (A:)
1b: SCOP_d2cevb_ (B:)
1c: SCOP_d2cevc_ (C:)
1d: SCOP_d2cevd_ (D:)
1e: SCOP_d2ceve_ (E:)
1f: SCOP_d2cevf_ (F:)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Bacillus caldovelox [TaxId: 33931]
(5)
1a
d2ceva_
A:
1b
d2cevb_
B:
1c
d2cevc_
C:
1d
d2cevd_
D:
1e
d2ceve_
E:
1f
d2cevf_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2cevA00 (A:2-299)
1b: CATH_2cevB00 (B:2-299)
1c: CATH_2cevC00 (C:2-299)
1d: CATH_2cevD00 (D:2-299)
1e: CATH_2cevE00 (E:2-299)
1f: CATH_2cevF00 (F:2-299)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411.
(5)
1a
2cevA00
A:2-299
1b
2cevB00
B:2-299
1c
2cevC00
C:2-299
1d
2cevD00
D:2-299
1e
2cevE00
E:2-299
1f
2cevF00
F:2-299
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Pfam Domains
(0, 0)
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (295 KB)
Header - Asym.Unit
Biol.Unit 1 (288 KB)
Header - Biol.Unit 1
Biol.Unit 2 (147 KB)
Header - Biol.Unit 2
Biol.Unit 3 (289 KB)
Header - Biol.Unit 3
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