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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2CEO
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
THYROXINE-BINDING GLOBULIN COMPLEX WITH THYROXINE
Authors
:
A. Zhou, Z. Wei, R. J. Read, R. W. Carrell
Date
:
08 Feb 06 (Deposition) - 14 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transport, Thyroxine-Binding Globulin, Serpin, Hormone Transport, Thyroxine, Disease Mutation, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Zhou, Z. Wei, R. J. Read, R. W. Carrell
Structural Mechanism For The Carriage And Release Of Thyroxine In The Blood.
Proc. Natl. Acad. Sci. Usa V. 103 13321 2006
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: 3,5,3',5'-TETRAIODO-L-THYRONINE (T44a)
2b: 3,5,3',5'-TETRAIODO-L-THYRONINE (T44b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
T44
2
Ligand/Ion
3,5,3',5'-TETRAIODO-L-THYRONINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:23 , ALA A:27 , LEU A:246 , LEU A:269 , ASN A:273 , ARG A:378 , SER B:204 , THR B:212 , GLN B:214 , HOH B:2008
BINDING SITE FOR RESIDUE T44 A1395
2
AC2
SOFTWARE
SER A:204 , THR A:212 , LEU B:246 , LEU B:269 , ASN B:273 , ARG B:378
BINDING SITE FOR RESIDUE T44 B1395
3
AC3
SOFTWARE
ILE A:25 , PHE A:29 , ASN A:32 , THR A:75 , GLY A:77
BINDING SITE FOR RESIDUE GOL A1396
4
AC4
SOFTWARE
PHE B:29 , ASN B:32 , THR B:75 , GLY B:77
BINDING SITE FOR RESIDUE GOL B1396
[
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SAPs(SNPs)/Variants
(9, 18)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_007102 (S23T, chain A/B, )
2: VAR_007103 (I96N, chain A/B, )
3: VAR_007104 (A113P, chain A/B, )
4: VAR_007105 (D171N, chain A/B, )
5: VAR_007106 (A191T, chain A/B, )
6: VAR_007107 (L227P, chain A/B, )
7: VAR_007108 (L283F, chain A/B, )
8: VAR_007109 (H331Y, chain A/B, )
9: VAR_007110 (P363L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_007102
S
43
T
THBG_HUMAN
Disease (TBG deficiency)
---
A/B
S
23
T
2
UniProt
VAR_007103
I
116
N
THBG_HUMAN
Disease (TBG deficiency)
28933689
A/B
I
96
N
3
UniProt
VAR_007104
A
133
P
THBG_HUMAN
Disease (TBG deficiency)
28933688
A/B
A
113
P
4
UniProt
VAR_007105
D
191
N
THBG_HUMAN
Polymorphism
1050086
A/B
D
171
N
5
UniProt
VAR_007106
A
211
T
THBG_HUMAN
Polymorphism
2234036
A/B
A
191
T
6
UniProt
VAR_007107
L
247
P
THBG_HUMAN
Disease (TBG deficiency)
28937312
A/B
L
227
P
7
UniProt
VAR_007108
L
303
F
THBG_HUMAN
Polymorphism
1804495
A/B
L
283
F
8
UniProt
VAR_007109
H
351
Y
THBG_HUMAN
Disease (TBG deficiency)
---
A/B
H
331
Y
9
UniProt
VAR_007110
P
383
L
THBG_HUMAN
Disease (TBG deficiency)
---
A/B
P
363
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SERPIN (A:365-375,B:365-375)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
THBG_HUMAN
385-395
2
A:365-375
B:365-375
[
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Exons
(4, 8)
Info
All Exons
Exon 1.2b (A:20-188 | B:20-188)
Exon 1.3a (A:188-279 | B:188-279)
Exon 1.4 (A:279-328 | B:279-328)
Exon 1.5b (A:329-394 (gaps) | B:329-394 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3a
3: Boundary 1.3a/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000372563
1
ENSE00001458103
X:105282729-105282689
41
THBG_HUMAN
-
0
0
-
-
1.2b
ENST00000372563
2b
ENSE00001458102
X:105281066-105280428
639
THBG_HUMAN
1-208
208
2
A:20-188
B:20-188
169
169
1.3a
ENST00000372563
3a
ENSE00000840356
X:105279376-105279103
274
THBG_HUMAN
208-299
92
2
A:188-279
B:188-279
92
92
1.4
ENST00000372563
4
ENSE00000840355
X:105278373-105278226
148
THBG_HUMAN
299-348
50
2
A:279-328
B:279-328
50
50
1.5b
ENST00000372563
5b
ENSE00000840354
X:105277694-105277197
498
THBG_HUMAN
349-415
67
2
A:329-394 (gaps)
B:329-394 (gaps)
66
66
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ceoa_ (A:)
1b: SCOP_d2ceob_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Serpins
(120)
Superfamily
:
Serpins
(120)
Family
:
automated matches
(20)
Protein domain
:
automated matches
(20)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2ceoa_
A:
1b
d2ceob_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2ceoA01 (A:20-190,A:287-340)
1b: CATH_2ceoB01 (B:20-190,B:287-340)
2a: CATH_2ceoA02 (A:191-286,A:341-394)
2b: CATH_2ceoB02 (B:191-286,B:341-394)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antithrombin; Chain I, domain 2
(100)
Homologous Superfamily
:
Antithrombin, subunit I, domain 2
(100)
Human (Homo sapiens)
(80)
1a
2ceoA01
A:20-190,A:287-340
1b
2ceoB01
B:20-190,B:287-340
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Alpha-1-antitrypsin; domain 1
(101)
Homologous Superfamily
:
Alpha-1-antitrypsin, domain 1
(101)
Human (Homo sapiens)
(81)
2a
2ceoA02
A:191-286,A:341-394
2b
2ceoB02
B:191-286,B:341-394
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (123 KB)
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