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(1)
Title
:
3D STRUCTURE PREDICTION OF THE KRINGLE 3 DOMAIN OF HUMAN HEPATOCYTE GROWTH FACTOR-SCATTER FACTOR (HGF-SF)
Authors
:
R. N. Miguel, T. L. Blundell, E. Gherardi
Date
:
06 Feb 06 (Deposition) - 21 Feb 06 (Release) - 22 Mar 06 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : D
Keywords
:
Hormone, Growth Factor, Hgf/Sf, Kringle, Glycoprotein,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Gherardi, S. Sandin, M. V. Petoukhov, J. Finch, M. E. Youles, L. G. Ofverstedt, R. N. Miguel, T. L. Blundell, G. F. Vande Woude, U. Skoglund, D. I. Svergun
Structural Basis Of Hepatocyte Growth Factor/Scatter Factor And Met Signalling.
Proc. Natl. Acad. Sci. Usa V. 103 4046 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019200 (D330Y, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019200
D
330
Y
HGF_HUMAN
Polymorphism
5745688
D
D
330
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: KRINGLE_1 (-|-|D:353-365|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KRINGLE_1
PS00021
Kringle domain signature.
HGF_HUMAN
176-189
259-271
353-365
439-452
1
-
-
D:353-365
-
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Exons
(2, 2)
Info
All Exons
Exon 1.10 (D:305-347)
Exon 1.11 (D:347-383)
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All Exon Boundaries
1: Boundary 1.8/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000222390
2a
ENSE00001949645
chr7:
81399514-81399200
315
HGF_HUMAN
1-30
30
0
-
-
1.3b
ENST00000222390
3b
ENSE00000698746
chr7:
81392188-81392023
166
HGF_HUMAN
30-85
56
0
-
-
1.4b
ENST00000222390
4b
ENSE00001790262
chr7:
81388120-81388008
113
HGF_HUMAN
85-123
39
0
-
-
1.5b
ENST00000222390
5b
ENSE00000698725
chr7:
81386619-81386505
115
HGF_HUMAN
123-161
39
0
-
-
1.6a
ENST00000222390
6a
ENSE00000698723
chr7:
81381578-81381436
143
HGF_HUMAN
161-209
49
0
-
-
1.7
ENST00000222390
7
ENSE00000698721
chr7:
81374436-81374316
121
HGF_HUMAN
209-249
41
0
-
-
1.8
ENST00000222390
8
ENSE00000698671
chr7:
81372787-81372669
119
HGF_HUMAN
249-289
41
0
-
-
1.10
ENST00000222390
10
ENSE00000698668
chr7:
81359095-81358921
175
HGF_HUMAN
289-347
59
1
D:305-347
43
1.11
ENST00000222390
11
ENSE00000698665
chr7:
81355333-81355206
128
HGF_HUMAN
347-390
44
1
D:347-383
37
1.12
ENST00000222390
12
ENSE00000698663
chr7:
81350163-81350061
103
HGF_HUMAN
390-424
35
0
-
-
1.13
ENST00000222390
13
ENSE00000698662
chr7:
81346681-81346548
134
HGF_HUMAN
424-469
46
0
-
-
1.14
ENST00000222390
14
ENSE00000698661
chr7:
81340835-81340797
39
HGF_HUMAN
469-482
14
0
-
-
1.15
ENST00000222390
15
ENSE00000698660
chr7:
81339559-81339463
97
HGF_HUMAN
482-514
33
0
-
-
1.16
ENST00000222390
16
ENSE00000698659
chr7:
81336680-81336606
75
HGF_HUMAN
514-539
26
0
-
-
1.17
ENST00000222390
17
ENSE00000698658
chr7:
81335743-81335603
141
HGF_HUMAN
539-586
48
0
-
-
1.18
ENST00000222390
18
ENSE00000698657
chr7:
81335069-81334963
107
HGF_HUMAN
586-622
37
0
-
-
1.19
ENST00000222390
19
ENSE00000698655
chr7:
81334851-81334706
146
HGF_HUMAN
622-670
49
0
-
-
1.20b
ENST00000222390
20b
ENSE00001870741
chr7:
81332073-81328322
3752
HGF_HUMAN
671-728
58
0
-
-
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Pfam Domains
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