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2CDE
Asym. Unit
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Asym.Unit (214 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (74 KB)
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(1)
Title
:
STRUCTURE AND BINDING KINETICS OF THREE DIFFERENT HUMAN CD1D-ALPHA-GALACTOSYLCERAMIDE SPECIFIC T CELL RECEPTORS - INKT-TCR
Authors
:
S. D. Gadola, M. Koch, J. Marles-Wright, N. M. Lissin, D. Sheperd, G. Matulis, K. Harlos, P. M. Villiger, D. I. Stuart, B. K. Jakobsen, V. Cerundolo, E. Y. Jones
Date
:
23 Jan 06 (Deposition) - 07 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Cell Receptor, T Cell Receptor, Tcr, Natural Killer T Cell, Cd1D, Alpha- Galactosylceramide, Mhc Class I
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. D. Gadola, M. Koch, J. Marles-Wright, N. M. Lissin, D. Sheperd, G. Matulis, K. Harlos, P. M. Villiger, D. I. Stuart, B. K. Jakobsen, V. Cerundolo, E. Y. Jones
Structrue And Binding Kinetics Of Three Different Human Cd1D-Alpha-Galactosylceramide-Specific T Cell Receptors
J. Exp. Med. V. 203 699 2006
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Hetero Components
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Sites
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2cdea2 (A:116-193)
1b: SCOP_d2cdec1 (C:2-115)
1c: SCOP_d2cdec2 (C:116-193)
1d: SCOP_d2cdee1 (E:2-115)
1e: SCOP_d2cdee2 (E:116-193)
2a: SCOP_d2cdeb2 (B:117-245)
2b: SCOP_d2cded2 (D:117-245)
2c: SCOP_d2cdef2 (F:117-245)
3a: SCOP_d2cdea1 (A:2-115)
3b: SCOP_d2cdeb1 (B:5-116)
3c: SCOP_d2cded1 (D:5-116)
3d: SCOP_d2cdef1 (F:5-116)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
T-cell antigen receptor
(81)
Human (Homo sapiens), alpha-chain [TaxId: 9606]
(20)
1a
d2cdea2
A:116-193
1b
d2cdec1
C:2-115
1c
d2cdec2
C:116-193
1d
d2cdee1
E:2-115
1e
d2cdee2
E:116-193
Human (Homo sapiens), beta-chain [TaxId: 9606]
(29)
2a
d2cdeb2
B:117-245
2b
d2cded2
D:117-245
2c
d2cdef2
F:117-245
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
T-cell antigen receptor
(105)
Human (Homo sapiens), beta-chain [TaxId: 9606]
(29)
3a
d2cdea1
A:2-115
3b
d2cdeb1
B:5-116
3c
d2cded1
D:5-116
3d
d2cdef1
F:5-116
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CATH Domains
(1, 9)
Info
all CATH domains
1a: CATH_2cdeA01 (A:2-114)
1b: CATH_2cdeC01 (C:2-114)
1c: CATH_2cdeE01 (E:2-114)
1d: CATH_2cdeB01 (B:2-116)
1e: CATH_2cdeD01 (D:2-116)
1f: CATH_2cdeF01 (F:2-116)
1g: CATH_2cdeB02 (B:117-242)
1h: CATH_2cdeD02 (D:117-242)
1i: CATH_2cdeF02 (F:117-242)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
2cdeA01
A:2-114
1b
2cdeC01
C:2-114
1c
2cdeE01
E:2-114
1d
2cdeB01
B:2-116
1e
2cdeD01
D:2-116
1f
2cdeF01
F:2-116
1g
2cdeB02
B:117-242
1h
2cdeD02
D:117-242
1i
2cdeF02
F:117-242
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (214 KB)
Header - Asym.Unit
Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
Biol.Unit 3 (74 KB)
Header - Biol.Unit 3
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