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2CCB
Biol. Unit 1
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Asym.Unit (21 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
Authors
:
M. Grininger, K. Zeth, D. Oesterhelt
Date
:
13 Jan 06 (Deposition) - 31 Jan 06 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (7x)
Keywords
:
Flavoprotein, Flavin, Flavin-Like Ligands
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Grininger, K. Zeth, D. Oesterhelt
Dodecins: A Family Of Lumichrome Binding Proteins.
J. Mol. Biol. V. 357 842 2006
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SODIUM ION (NAa)
4a: RIBOFLAVIN (RBFa)
5a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
RBF
7
Ligand/Ion
RIBOFLAVIN
5
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:41 , HOH A:2046 , HOH A:2047 , HOH A:2049 , HOH A:2070
BINDING SITE FOR RESIDUE MG A 102
2
AC2
SOFTWARE
CL A:105 , HOH A:2072
BINDING SITE FOR RESIDUE NA A 104
3
AC3
SOFTWARE
GLN A:59 , NA A:104
BINDING SITE FOR RESIDUE CL A 105
4
AC4
SOFTWARE
GLU A:14 , GLU A:51 , HOH A:2016 , HOH A:2023 , HOH A:2024 , HOH A:2032 , HOH A:2062
BINDING SITE FOR RESIDUE MG A1066
5
AC5
SOFTWARE
SER A:15 , PHE A:16 , THR A:17 , HOH A:2080 , HOH A:2081
BINDING SITE FOR RESIDUE SO4 A1068
6
AC6
SOFTWARE
PHE A:3 , VAL A:35 , TRP A:36 , VAL A:44 , GLU A:45 , ALA A:48 , GLN A:55 , HOH A:2046 , HOH A:2057 , HOH A:2068 , HOH A:2078 , HOH A:2079
BINDING SITE FOR RESIDUE RBF A1067
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ccba_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
Dodecin-like
(29)
Protein domain
:
automated matches
(24)
Halobacterium salinarum [TaxId: 478009]
(12)
1a
d2ccba_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ccbA00 (A:2-65)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dodecin subunit-like
(24)
Homologous Superfamily
:
Flavin-binding protein dodecin
(24)
Halobacterium salinarum. Organism_taxid: 478009. Strain: r1.
(8)
1a
2ccbA00
A:2-65
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
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