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2CBX
Biol. Unit 1
Info
Asym.Unit (298 KB)
Biol.Unit 1 (578 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF 5'-FLUORODEOXYADENOSINE SYNTHASE FROM STREPTOMYCES CATTLEYA COMPLEXED WITH BETA-D-ERYTHROFURANOSYL-ADENOSINE
Authors
:
A. R. Mcewan, C. D. Cadicamo, H. Deng, R. P. Mcglinchey, D. R. Robinson, D. O'Hagan, J. H. Naismith, J. Spencer
Date
:
09 Jan 06 (Deposition) - 06 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Transferase, Fluorinase, 5'-Fluorodeoxyadenosine Synthase, Fla, Inhibitor, Aza, Streptomyces Cattleya, Sam Analogue
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. L. Cobb, H. Deng, A. R. Mcewan, J. H. Naismith, D. O'Hagan, D. A. Robinson
Substrate Specificity In Enzymatic Fluorination. Fluorinase From Streptomyces Cattleya Accepts 2'-Deoxyadenosine Substrates
Org. Biomol. Chem. V. 4 1458 2006
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: BETA-D-ERYTHROFURANOSYL-ADENOSINE (CC5a)
1b: BETA-D-ERYTHROFURANOSYL-ADENOSINE (CC5b)
1c: BETA-D-ERYTHROFURANOSYL-ADENOSINE (CC5c)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
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Label:
No.
Name
Count
Type
Full Name
1
CC5
6
Ligand/Ion
BETA-D-ERYTHROFURANOSYL-ADENOSINE
2
GOL
18
Ligand/Ion
GLYCEROL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:16 , TRP A:50 , TYR A:77 , PRO A:78 , THR A:80 , THR A:155 , SER A:158 , GOL A:1303 , PHE B:213 , ASN B:215 , PHE B:254 , ARG B:277 , ALA B:279
BINDING SITE FOR RESIDUE CC5 A 500
02
AC2
SOFTWARE
ASP B:16 , TRP B:50 , TYR B:77 , PRO B:78 , THR B:80 , THR B:155 , SER B:158 , PHE C:213 , ASN C:215 , PHE C:254 , ARG C:277 , ALA C:279
BINDING SITE FOR RESIDUE CC5 B 500
03
AC3
SOFTWARE
PHE A:213 , ASN A:215 , PHE A:254 , ARG A:277 , ALA A:279 , GOL A:1302 , ASP C:16 , TRP C:50 , TYR C:77 , PRO C:78 , THR C:80 , THR C:155 , SER C:158
BINDING SITE FOR RESIDUE CC5 C 500
04
AC4
SOFTWARE
THR A:19 , LYS A:28 , ASP A:42 , HOH A:2151 , HOH A:2152 , HOH A:2153 , ASP B:42 , VAL B:43 , HOH B:2027 , HOH B:2168
BINDING SITE FOR RESIDUE GOL A1300
05
AC5
SOFTWARE
TYR A:136 , HOH A:2154
BINDING SITE FOR RESIDUE GOL A1301
06
AC6
SOFTWARE
ASP A:210 , TRP A:217 , SER A:269 , ARG A:270 , HOH A:2119 , HOH A:2155 , ASP C:21 , SER C:23 , THR C:155 , CC5 C:500 , HOH C:2096
BINDING SITE FOR RESIDUE GOL A1302
07
AC7
SOFTWARE
LEU A:17 , SER A:23 , THR A:155 , PHE A:156 , CC5 A:500 , HOH A:2089 , HOH A:2156 , PHE B:213 , SER B:269
BINDING SITE FOR RESIDUE GOL A1303
08
AC8
SOFTWARE
GLY A:69 , ILE A:118 , LEU A:169 , ALA A:170 , HOH A:2157 , ALA C:108
BINDING SITE FOR RESIDUE GOL A1304
09
AC9
SOFTWARE
THR B:19 , LYS B:28 , ASP B:42 , HOH B:2168 , HOH B:2169 , HOH B:2170 , ASP C:42 , VAL C:43 , HOH C:2024 , HOH C:2167
BINDING SITE FOR RESIDUE GOL B1301
10
BC1
SOFTWARE
ASP A:42 , VAL A:43 , HOH A:2015 , HOH A:2152 , THR C:19 , VAL C:24 , LYS C:28 , ASP C:42 , HOH C:2166 , HOH C:2167 , HOH C:2168
BINDING SITE FOR RESIDUE GOL C1299
11
BC2
SOFTWARE
TYR C:136 , LEU C:137
BINDING SITE FOR RESIDUE GOL C1300
12
BC3
SOFTWARE
ARG B:277 , PRO B:285 , TYR B:286 , ASP C:241 , HOH C:2131
BINDING SITE FOR RESIDUE GOL C1301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2cbxa1 (A:193-298)
1b: SCOP_d2cbxb1 (B:193-298)
1c: SCOP_d2cbxc1 (C:193-298)
2a: SCOP_d2cbxa2 (A:8-192)
2b: SCOP_d2cbxb2 (B:8-192)
2c: SCOP_d2cbxc2 (C:8-192)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Bacterial fluorinating enzyme, C-terminal domain
(16)
Superfamily
:
Bacterial fluorinating enzyme, C-terminal domain
(16)
Family
:
Bacterial fluorinating enzyme, C-terminal domain
(10)
Protein domain
:
5'-fluoro-5'-deoxyadenosine synthase
(10)
Streptomyces cattleya [TaxId: 29303]
(10)
1a
d2cbxa1
A:193-298
1b
d2cbxb1
B:193-298
1c
d2cbxc1
C:193-298
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Bacterial fluorinating enzyme, N-terminal domain
(16)
Superfamily
:
Bacterial fluorinating enzyme, N-terminal domain
(16)
Family
:
Bacterial fluorinating enzyme, N-terminal domain
(14)
Protein domain
:
5'-fluoro-5'-deoxyadenosine synthase
(10)
Streptomyces cattleya [TaxId: 29303]
(10)
2a
d2cbxa2
A:8-192
2b
d2cbxb2
B:8-192
2c
d2cbxc2
C:8-192
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (298 KB)
Header - Asym.Unit
Biol.Unit 1 (578 KB)
Header - Biol.Unit 1
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