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2CBJ
Biol. Unit 2
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Asym.Unit (397 KB)
Biol.Unit 1 (197 KB)
Biol.Unit 2 (197 KB)
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(1)
Title
:
STRUCTURE OF THE CLOSTRIDIUM PERFRINGENS NAGJ FAMILY 84 GLYCOSIDE HYDROLASE, A HOMOLOGUE OF HUMAN O-GLCNACASE IN COMPLEX WITH PUGNAC
Authors
:
F. V. Rao, H. C. Dorfmueller, F. Villa, M. Allwood, I. M. Eggleston, D. M. Aalten
Date
:
05 Jan 06 (Deposition) - 13 Feb 06 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
O-Glcnac, Family 84 Glycoside Hydrolases, Glycoside Hydrolase, Hyaluronidases, Carbohydrates, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
F. V. Rao, H. C. Dorfmueller, F. Villa, M. Allwood, I. M. Eggleston, D. M. F. Van Aalten
Structural Insights Into The Mechanism And Inhibition Of Eukaryotic O-Glcnac Hydrolysis.
Embo J. V. 25 1569 2006
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRA... (OANa)
2b: O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRA... (OANb)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
OAN
1
Ligand/Ion
O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE B:265
BINDING SITE FOR RESIDUE CL B 1626
2
AC2
SOFTWARE
SER B:64
BINDING SITE FOR RESIDUE CL B 1627
3
AC3
SOFTWARE
GLY A:187 , PHE A:188 , LYS A:218 , ASP A:297 , ASP A:298 , TYR A:335 , VAL A:370 , TRP A:394 , ASN A:396 , ASP A:401 , TYR A:402 , ASN A:429 , TRP A:490 , HOH A:2143 , LEU B:512 , SER B:513 , ASP B:620 , LEU B:621
BINDING SITE FOR RESIDUE OAN A 1625
4
AC4
SOFTWARE
LEU A:512 , SER A:513 , GLY B:187 , TYR B:189 , LYS B:218 , ASP B:297 , ASP B:298 , TYR B:335 , VAL B:370 , TRP B:394 , ASN B:396 , ASP B:401 , TYR B:402 , ASN B:429
BINDING SITE FOR RESIDUE OAN B 1625
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2cbja1 (A:496-624)
1b: SCOP_d2cbjb1 (B:496-624)
2a: SCOP_d2cbja3 (A:40-178)
2b: SCOP_d2cbjb3 (B:40-178)
3a: SCOP_d2cbja2 (A:179-495)
3b: SCOP_d2cbjb2 (B:179-495)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Hyaluronidase domain-like
(25)
Superfamily
:
Hyaluronidase post-catalytic domain-like
(20)
Family
:
Hyaluronidase post-catalytic domain-like
(15)
Protein domain
:
Hyaluronidase, post-catalytic domain 3
(7)
Clostridium perfringens [TaxId: 1502]
(7)
1a
d2cbja1
A:496-624
1b
d2cbjb1
B:496-624
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
Hyaluronidase N-terminal domain-like
(15)
Protein domain
:
Hyaluronidase N-terminal domain
(7)
Clostridium perfringens [TaxId: 1502]
(7)
2a
d2cbja3
A:40-178
2b
d2cbjb3
B:40-178
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
Hyaluronidase catalytic domain
(7)
Clostridium perfringens [TaxId: 1502]
(7)
3a
d2cbja2
A:179-495
3b
d2cbjb2
B:179-495
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CATH Domains
(0, 0)
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (397 KB)
Header - Asym.Unit
Biol.Unit 1 (197 KB)
Header - Biol.Unit 1
Biol.Unit 2 (197 KB)
Header - Biol.Unit 2
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