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2CB8
Biol. Unit 2
Info
Asym.Unit (81 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (39 KB)
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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF LIGANDED HUMAN L-ACBP
Authors
:
J. P. Taskinen, D. M. Van Aalten, J. Knudsen, R. K. Wierenga
Date
:
03 Jan 06 (Deposition) - 25 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Acyl-Coenzyme A Binding Protein, Fatty Acid, Acetylation, Alternative Splicing, Lipid-Binding, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Taskinen, D. M. Van Aalten, J. Knudsen, R. K. Wierenga
High Resolution Crystal Structures Of Unliganded And Liganded Human Liver Acbp Reveal A New Mode Of Binding For The Acyl-Coa Ligand.
Proteins: Struct. , Funct. , V. 66 229 2007 Bioinf.
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 2-METHOXYETHANOL (MXEa)
2a: TETRADECANOYL-COA (MYAa)
2b: TETRADECANOYL-COA (MYAb)
2c: TETRADECANOYL-COA (MYAc)
2d: TETRADECANOYL-COA (MYAd)
3a: SULFATE ION (SO4a)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MXE
1
Ligand/Ion
2-METHOXYETHANOL
2
MYA
2
Ligand/Ion
TETRADECANOYL-COA
3
SO4
-1
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
7: BC3 (SOFTWARE)
8: BC4 (SOFTWARE)
9: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:31 , HOH A:2150 , HOH A:2151 , GLU B:7
BINDING SITE FOR RESIDUE ZN A1089
2
AC4
SOFTWARE
SER A:2 , GLU A:68 , HOH A:2152 , ASP B:69
BINDING SITE FOR RESIDUE ZN A1092
3
AC8
SOFTWARE
GLU A:23 , GLU B:11 , HIS B:15 , HOH B:2131 , HOH B:2132
BINDING SITE FOR RESIDUE ZN B1090
4
AC9
SOFTWARE
GLU A:7 , MYA B:1088 , HOH B:2133 , HOH B:2134
BINDING SITE FOR RESIDUE ZN B1091
5
BC1
SOFTWARE
ALA A:10 , ARG A:14 , ILE A:28 , TYR A:29 , TYR A:32 , LYS A:33 , LYS A:55 , TYR A:74 , ZN A:1090 , ZN A:1093 , MYA A:1094 , SO4 A:1095 , HOH A:2026 , HOH A:2100 , HOH A:2106 , HOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2146 , HOH A:2147 , HOH A:2148 , HOH A:2149 , MYA B:1088
BINDING SITE FOR RESIDUE MYA A1088
6
BC2
SOFTWARE
GLU A:11 , ARG A:14 , HIS A:15 , LYS A:19 , ASP A:22 , THR A:51 , MYA A:1088 , ZN A:1090 , ZN A:1091 , ZN A:1093 , SO4 A:1095 , ZN A:1096 , HOH A:2025 , HOH A:2106 , HOH A:2153 , HOH A:2154 , HOH A:2155 , MYA B:1088
BINDING SITE FOR RESIDUE MYA A1094
7
BC3
SOFTWARE
ALA A:4 , GLU A:7 , LYS A:8 , GLU A:11 , ARG A:14 , LYS A:19 , ASP A:22 , ARG A:44 , LYS A:53 , ALA A:54 , ASP A:57 , MYA A:1088 , MYA A:1094 , HOH A:2114 , ALA B:10 , ARG B:14 , ILE B:28 , TYR B:29 , TYR B:32 , LYS B:33 , LYS B:55 , TYR B:74 , MYA B:1089 , ZN B:1091 , HOH B:2088 , HOH B:2123 , HOH B:2124 , HOH B:2125 , HOH B:2126 , HOH B:2127 , HOH B:2128 , HOH B:2129 , HOH B:2130 , HOH B:2133 , HOH B:2134
BINDING SITE FOR RESIDUE MYA B1088
8
BC4
SOFTWARE
VAL B:13 , ARG B:14 , LEU B:16 , LYS B:19 , PRO B:20 , MET B:25 , MYA B:1088 , MXE B:1092
BINDING SITE FOR RESIDUE MYA B1089
9
BC5
SOFTWARE
ASP A:39 , THR A:65 , HOH A:2077 , MYA B:1089 , HOH B:2045
BINDING SITE FOR RESIDUE MXE B1092
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_048160 (D39N, chain B, )
2: VAR_048161 (M71V, chain B, )
3: VAR_048162 (G86R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048160
D
39
N
ACBP_HUMAN
Polymorphism
8192504
B
D
39
N
2
UniProt
VAR_048161
M
71
V
ACBP_HUMAN
Polymorphism
8192506
B
M
71
V
3
UniProt
VAR_048162
G
86
R
ACBP_HUMAN
Polymorphism
8192507
B
G
86
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
2: ACB_1 (B:20-38)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACB_2
PS51228
Acyl-CoA-binding (ACB) domain profile.
ACBP_HUMAN
2-87
0
-
2
ACB_1
PS00880
Acyl-CoA-binding (ACB) domain signature.
ACBP_HUMAN
20-38
1
-
B:20-38
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2cb8a_ (A:)
1b: SCOP_d2cb8b_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Acyl-CoA binding protein-like
(48)
Superfamily
:
Acyl-CoA binding protein
(15)
Family
:
Acyl-CoA binding protein
(10)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2cb8a_
A:
1b
d2cb8b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Protein & NOT Variant
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (81 KB)
Header - Asym.Unit
Biol.Unit 1 (38 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
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