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2CB8
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (39 KB)
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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF LIGANDED HUMAN L-ACBP
Authors
:
J. P. Taskinen, D. M. Van Aalten, J. Knudsen, R. K. Wierenga
Date
:
03 Jan 06 (Deposition) - 25 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Acyl-Coenzyme A Binding Protein, Fatty Acid, Acetylation, Alternative Splicing, Lipid-Binding, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Taskinen, D. M. Van Aalten, J. Knudsen, R. K. Wierenga
High Resolution Crystal Structures Of Unliganded And Liganded Human Liver Acbp Reveal A New Mode Of Binding For The Acyl-Coa Ligand.
Proteins: Struct. , Funct. , V. 66 229 2007 Bioinf.
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: 2-METHOXYETHANOL (MXEa)
2a: TETRADECANOYL-COA (MYAa)
2b: TETRADECANOYL-COA (MYAb)
2c: TETRADECANOYL-COA (MYAc)
2d: TETRADECANOYL-COA (MYAd)
3a: SULFATE ION (SO4a)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MXE
1
Ligand/Ion
2-METHOXYETHANOL
2
MYA
4
Ligand/Ion
TETRADECANOYL-COA
3
SO4
1
Ligand/Ion
SULFATE ION
4
ZN
8
Ligand/Ion
ZINC ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:31 , HOH A:2150 , HOH A:2151 , GLU B:7
BINDING SITE FOR RESIDUE ZN A1089
02
AC2
SOFTWARE
MYA A:1088 , ZN A:1093 , MYA A:1094 , SO4 A:1095
BINDING SITE FOR RESIDUE ZN A1090
03
AC3
SOFTWARE
GLU A:11 , HIS A:15 , ASP A:22 , MYA A:1094
BINDING SITE FOR RESIDUE ZN A1091
04
AC4
SOFTWARE
SER A:2 , GLU A:68 , HOH A:2152 , ASP B:69
BINDING SITE FOR RESIDUE ZN A1092
05
AC5
SOFTWARE
MYA A:1088 , ZN A:1090 , MYA A:1094 , SO4 A:1095
BINDING SITE FOR RESIDUE ZN A1093
06
AC6
SOFTWARE
MYA A:1088 , ZN A:1090 , ZN A:1093 , MYA A:1094 , ZN A:1096
BINDING SITE FOR RESIDUE SO4 A1095
07
AC7
SOFTWARE
MYA A:1094 , SO4 A:1095
BINDING SITE FOR RESIDUE ZN A1096
08
AC8
SOFTWARE
GLU A:23 , GLU B:11 , HIS B:15 , HOH B:2131 , HOH B:2132
BINDING SITE FOR RESIDUE ZN B1090
09
AC9
SOFTWARE
GLU A:7 , MYA B:1088 , HOH B:2133 , HOH B:2134
BINDING SITE FOR RESIDUE ZN B1091
10
BC1
SOFTWARE
ALA A:10 , ARG A:14 , ILE A:28 , TYR A:29 , TYR A:32 , LYS A:33 , LYS A:55 , TYR A:74 , ZN A:1090 , ZN A:1093 , MYA A:1094 , SO4 A:1095 , HOH A:2026 , HOH A:2100 , HOH A:2106 , HOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2146 , HOH A:2147 , HOH A:2148 , HOH A:2149 , MYA B:1088
BINDING SITE FOR RESIDUE MYA A1088
11
BC2
SOFTWARE
GLU A:11 , ARG A:14 , HIS A:15 , LYS A:19 , ASP A:22 , THR A:51 , MYA A:1088 , ZN A:1090 , ZN A:1091 , ZN A:1093 , SO4 A:1095 , ZN A:1096 , HOH A:2025 , HOH A:2106 , HOH A:2153 , HOH A:2154 , HOH A:2155 , MYA B:1088
BINDING SITE FOR RESIDUE MYA A1094
12
BC3
SOFTWARE
ALA A:4 , GLU A:7 , LYS A:8 , GLU A:11 , ARG A:14 , LYS A:19 , ASP A:22 , ARG A:44 , LYS A:53 , ALA A:54 , ASP A:57 , MYA A:1088 , MYA A:1094 , HOH A:2114 , ALA B:10 , ARG B:14 , ILE B:28 , TYR B:29 , TYR B:32 , LYS B:33 , LYS B:55 , TYR B:74 , MYA B:1089 , ZN B:1091 , HOH B:2088 , HOH B:2123 , HOH B:2124 , HOH B:2125 , HOH B:2126 , HOH B:2127 , HOH B:2128 , HOH B:2129 , HOH B:2130 , HOH B:2133 , HOH B:2134
BINDING SITE FOR RESIDUE MYA B1088
13
BC4
SOFTWARE
VAL B:13 , ARG B:14 , LEU B:16 , LYS B:19 , PRO B:20 , MET B:25 , MYA B:1088 , MXE B:1092
BINDING SITE FOR RESIDUE MYA B1089
14
BC5
SOFTWARE
ASP A:39 , THR A:65 , HOH A:2077 , MYA B:1089 , HOH B:2045
BINDING SITE FOR RESIDUE MXE B1092
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048160 (D39N, chain A/B, )
2: VAR_048161 (M71V, chain A/B, )
3: VAR_048162 (G86R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048160
D
39
N
ACBP_HUMAN
Polymorphism
8192504
A/B
D
39
N
2
UniProt
VAR_048161
M
71
V
ACBP_HUMAN
Polymorphism
8192506
A/B
M
71
V
3
UniProt
VAR_048162
G
86
R
ACBP_HUMAN
Polymorphism
8192507
A/B
G
86
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: ACB_2 (A:2-87)
2: ACB_1 (A:20-38,B:20-38)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACB_2
PS51228
Acyl-CoA-binding (ACB) domain profile.
ACBP_HUMAN
2-87
1
A:2-87
2
ACB_1
PS00880
Acyl-CoA-binding (ACB) domain signature.
ACBP_HUMAN
20-38
2
A:20-38
B:20-38
[
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Exons
(4, 8)
Info
All Exons
Exon 1.1a (A:2-3 | B:3-3)
Exon 1.5a (A:4-43 | B:4-43)
Exon 1.6b (A:43-64 | B:43-64)
Exon 1.7f (A:64-87 | B:64-87)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.5a
3: Boundary 1.5a/1.6b
4: Boundary 1.6b/1.7f
5: Boundary 1.7f/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000355857
1a
ENSE00001883996
chr2:
120124497-120124636
140
ACBP_HUMAN
1-3
3
2
A:2-3
B:3-3
2
1
1.5a
ENST00000355857
5a
ENSE00001202551
chr2:
120125764-120125881
118
ACBP_HUMAN
4-43
40
2
A:4-43
B:4-43
40
40
1.6b
ENST00000355857
6b
ENSE00001020634
chr2:
120128316-120128378
63
ACBP_HUMAN
43-64
22
2
A:43-64
B:43-64
22
22
1.7f
ENST00000355857
7f
ENSE00001931282
chr2:
120129821-120130126
306
ACBP_HUMAN
64-87
24
2
A:64-87
B:64-87
24
24
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2cb8a_ (A:)
1b: SCOP_d2cb8b_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Acyl-CoA binding protein-like
(48)
Superfamily
:
Acyl-CoA binding protein
(15)
Family
:
Acyl-CoA binding protein
(10)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2cb8a_
A:
1b
d2cb8b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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