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2CAM
Biol. Unit 1
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Asym.Unit (48 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
AVIDIN MUTANT (K3E,K9E,R26D,R124L)
Authors
:
C. Rosano, P. Arosio, M. Bolognesi
Date
:
27 Mar 98 (Deposition) - 15 Jul 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Avidin, Biotin Binding Protein, Calycins, Up-And-Down Beta Barrel, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Nardone, C. Rosano, P. Santambrogio, F. Curnis, A. Corti, F. Magni, A. G. Siccardi, G. Paganelli, R. Losso, B. Apreda, M. Bolognesi, A. Sidoli, P. Arosio
Biochemical Characterization And Crystal Structure Of A Recombinant Hen Avidin And Its Acidic Mutant Expressed In Escherichia Coli.
Eur. J. Biochem. V. 256 453 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(2, 2)
Info
All Sites
1: B1 (UNKNOWN)
2: B2 (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
B1
UNKNOWN
ASN A:12 , SER A:16 , TYR A:33 , THR A:35 , ASN A:118
NULL
2
B2
UNKNOWN
ASN B:12 , SER B:16 , TYR B:33 , THR B:35 , ASN B:118
NULL
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_AVID_CHICK_001 (I34T, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_AVID_CHICK_001
*
I
58
T
AVID_CHICK
---
---
A/B
I
34
T
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: AVIDIN_2 (A:2-125,B:2-125)
2: AVIDIN_1 (A:108-122,B:108-122)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AVIDIN_2
PS51326
Avidin-like domain profile.
AVID_CHICK
26-149
4
A:2-125
B:2-125
2
AVIDIN_1
PS00577
Avidin-like domain signature.
AVID_CHICK
132-146
4
A:108-122
B:108-122
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d2cama_ (A:)
1b: SCOP_d2camb_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Streptavidin-like
(225)
Superfamily
:
Avidin/streptavidin
(197)
Family
:
Avidin/streptavidin
(181)
Protein domain
:
Avidin
(10)
Chicken (Gallus gallus) [TaxId: 9031]
(10)
1a
d2cama_
A:
1b
d2camb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_2camA00 (A:2-125)
1b: CATH_2camB00 (B:2-125)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.30, no name defined]
(148)
Chicken (Gallus gallus)
(26)
1a
2camA00
A:2-125
1b
2camB00
B:2-125
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Pfam Domains
(0, 0)
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