PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2C9H
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (137 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF MITOCHONDRIAL BETA-KETOACYL SYNTHASE
Authors
:
G. Bunkoczi, X. Wu, C. Smee, O. Gileadi, C. Arrowsmith, A. Edwards, M. Su J. Weigelt, F. Von Delft, U. Oppermann
Date
:
12 Dec 05 (Deposition) - 13 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase, Fatty Acid Synthesis, Mitochondria, Ketoacyl Synthase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Bunkoczi, X. Wu, C. Smee, O. Gileadi, C. Arrowsmith, A. Edwards, M. Sundstrom, J. Weigelt, F. Von Delft, U. Oppermann
Structure Of Mitochondrial Beta-Ketoacyl Synthase
To Be Published
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
2a: NICKEL (II) ION (NIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
2
NI
1
Ligand/Ion
NICKEL (II) ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:26 , HIS A:210 , HOH A:2003 , HOH A:2127
BINDING SITE FOR RESIDUE NI A1445
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036064 (F91I, chain A, )
2: VAR_OXSM_HUMAN_CCDS2643_1_01 (F91I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036064
F
106
I
OXSM_HUMAN
Unclassified
---
A
F
91
I
2
CancerSNP
VAR_OXSM_HUMAN_CCDS2643_1_01
*
F
106
I
OXSM_HUMAN
Disease (Breast cancer)
---
A
F
91
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:185-201)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
OXSM_HUMAN
200-216
1
A:185-201
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.6e (A:18-311 (gaps))
Exon 1.7b (A:311-444)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4a/1.6e
2: Boundary 1.6e/1.7b
3: Boundary 1.7b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000280701
4a
ENSE00000997589
chr3:
25831571-25831638
68
OXSM_HUMAN
-
0
0
-
-
1.6e
ENST00000280701
6e
ENSE00000997590
chr3:
25832481-25833488
1008
OXSM_HUMAN
1-326
326
1
A:18-311 (gaps)
297
1.7b
ENST00000280701
7b
ENSE00000997591
chr3:
25835583-25836025
443
OXSM_HUMAN
326-459
134
1
A:311-444
134
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2c9ha1 (A:18-281)
1b: SCOP_d2c9ha2 (A:282-444)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2c9ha1
A:18-281
1b
d2c9ha2
A:282-444
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2c9hA02 (A:289-444)
1b: CATH_2c9hA01 (A:18-288)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Human (Homo sapiens)
(12)
1a
2c9hA02
A:289-444
1b
2c9hA01
A:18-288
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (74 KB)
Header - Asym.Unit
Biol.Unit 1 (137 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2C9H
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
