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2C9B
Biol. Unit 2
Info
Asym.Unit (223 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)
Authors
:
E. Morgunova, B. Illarionov, G. Jin, I. Haase, M. Fischer, M. Cushman, A R. Ladenstein
Date
:
09 Dec 05 (Deposition) - 13 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Transferase, Inhibitor Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Morgunova, B. Illarionov, T. Sambaiah, I. Haase, A. Bacher, M. Cushman, M. Fischer, R. Ladenstein
Structural And Thermodynamic Insights Into The Binding Mode Of Five Novel Inhibitors Of Lumazine Synthase From Mycobacterium Tuberculosis.
Febs J. V. 273 4790 2006
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
1k: POTASSIUM ION (Kk)
1l: POTASSIUM ION (Kl)
1m: POTASSIUM ION (Km)
1n: POTASSIUM ION (Kn)
1o: POTASSIUM ION (Ko)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
3i: PHOSPHATE ION (PO4i)
3j: PHOSPHATE ION (PO4j)
4a: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGa)
4b: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGb)
4c: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGc)
4d: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGd)
4e: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGe)
4f: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGf)
4g: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGg)
4h: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGh)
4i: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGi)
4j: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
-1
Ligand/Ion
POTASSIUM ION
2
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
PO4
5
Ligand/Ion
PHOSPHATE ION
4
PUG
5
Ligand/Ion
3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC7 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC6 (SOFTWARE)
19: DC7 (SOFTWARE)
20: DC8 (SOFTWARE)
21: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
GLU A:155 , LEU A:156 , ARG A:157 , LEU H:156 , ARG H:157
BINDING SITE FOR RESIDUE K A1162
02
AC7
SOFTWARE
GLU C:155 , LEU C:156 , ARG C:157 , LEU F:156 , ARG F:157
BINDING SITE FOR RESIDUE K C1162
03
BC1
SOFTWARE
GLU D:155 , LEU D:156 , ARG D:157 , LEU J:156 , ARG J:157
BINDING SITE FOR RESIDUE K D1162
04
BC4
SOFTWARE
LEU E:156 , ARG E:157 , GLU I:155 , LEU I:156 , ARG I:157
BINDING SITE FOR RESIDUE K E1162
05
BC6
SOFTWARE
ALA F:70 , HIS F:73 , THR F:110 , HOH F:2017 , HOH F:2032
BINDING SITE FOR RESIDUE K F1161
06
BC7
SOFTWARE
GLY F:85 , GLN F:86 , THR F:87 , HOH F:2073 , HOH F:2074 , ARG G:128
BINDING SITE FOR RESIDUE PO4 F1162
07
BC8
SOFTWARE
LEU B:156 , ARG B:157 , LEU G:156 , ARG G:157
BINDING SITE FOR RESIDUE K G1161
08
BC9
SOFTWARE
ALA G:70 , HIS G:73 , THR G:110
BINDING SITE FOR RESIDUE K G1162
09
CC1
SOFTWARE
GLY G:85 , GLN G:86 , THR G:87 , HOH G:2081 , ARG H:128
BINDING SITE FOR RESIDUE PO4 G1163
10
CC2
SOFTWARE
ALA H:70 , HIS H:73 , THR H:110
BINDING SITE FOR RESIDUE K H1161
11
CC3
SOFTWARE
GLY H:85 , GLN H:86 , THR H:87 , HIS H:89 , HOH H:2055 , ARG I:128
BINDING SITE FOR RESIDUE PO4 H1162
12
CC4
SOFTWARE
ALA I:70 , HIS I:73 , THR I:110 , HOH I:2025 , HOH I:2036
BINDING SITE FOR RESIDUE K I1161
13
CC5
SOFTWARE
GLY I:85 , GLN I:86 , THR I:87 , HIS I:89
BINDING SITE FOR RESIDUE PO4 I1162
14
CC6
SOFTWARE
ALA J:70 , HIS J:73 , THR J:110 , HOH J:2030
BINDING SITE FOR RESIDUE K J1161
15
CC7
SOFTWARE
ARG F:128 , HOH F:2064 , GLY J:85 , GLN J:86 , THR J:87
BINDING SITE FOR RESIDUE PO4 J1162
16
DC4
SOFTWARE
TRP F:27 , HIS F:28 , ALA F:59 , ILE F:60 , GLU F:61 , VAL F:81 , ILE F:83 , HIS F:89 , HOH F:2071 , HOH F:2072 , ALA G:113 , ASN G:114 , LYS G:138
BINDING SITE FOR RESIDUE PUG F 701
17
DC5
SOFTWARE
TRP G:27 , LEU G:57 , GLY G:58 , ALA G:59 , ILE G:60 , GLU G:61 , VAL G:81 , VAL G:82 , ILE G:83 , HIS G:89 , HOH G:2080 , HOH G:2081 , ALA H:113 , ASN H:114 , HOH H:2046
BINDING SITE FOR RESIDUE PUG G 701
18
DC6
SOFTWARE
TRP H:27 , HIS H:28 , GLY H:58 , ALA H:59 , ILE H:60 , GLU H:61 , VAL H:81 , VAL H:82 , ILE H:83 , HIS H:89 , ASN I:114
BINDING SITE FOR RESIDUE PUG H 701
19
DC7
SOFTWARE
TRP I:27 , ALA I:59 , ILE I:60 , GLU I:61 , VAL I:81 , VAL I:82 , ILE I:83 , HIS I:89 , HOH I:2059 , HOH I:2060 , ALA J:113 , ASN J:114
BINDING SITE FOR RESIDUE PUG I 701
20
DC8
SOFTWARE
ALA F:113 , ASN F:114 , LYS F:138 , TRP J:27 , HIS J:28 , GLY J:58 , ALA J:59 , ILE J:60 , GLU J:61 , VAL J:81 , VAL J:82 , ILE J:83 , HIS J:89
BINDING SITE FOR RESIDUE PUG J 701
21
EC1
SOFTWARE
GLN F:99 , GLN G:99 , GLN H:99 , GLN J:99
BINDING SITE FOR RESIDUE MPD J1163
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2c9bA00 (A:14-160)
1b: CATH_2c9bB00 (B:14-160)
1c: CATH_2c9bD00 (D:14-160)
1d: CATH_2c9bF00 (F:14-160)
1e: CATH_2c9bG00 (G:14-160)
1f: CATH_2c9bI00 (I:14-160)
1g: CATH_2c9bC00 (C:15-160)
1h: CATH_2c9bE00 (E:15-160)
1i: CATH_2c9bH00 (H:15-160)
1j: CATH_2c9bJ00 (J:15-160)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(8)
1a
2c9bA00
A:14-160
1b
2c9bB00
B:14-160
1c
2c9bD00
D:14-160
1d
2c9bF00
F:14-160
1e
2c9bG00
G:14-160
1f
2c9bI00
I:14-160
1g
2c9bC00
C:15-160
1h
2c9bE00
E:15-160
1i
2c9bH00
H:15-160
1j
2c9bJ00
J:15-160
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]
Pfam Domains
(0, 0)
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