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2C9B
Biol. Unit 1
Info
Asym.Unit (223 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)
Authors
:
E. Morgunova, B. Illarionov, G. Jin, I. Haase, M. Fischer, M. Cushman, A R. Ladenstein
Date
:
09 Dec 05 (Deposition) - 13 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Transferase, Inhibitor Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Morgunova, B. Illarionov, T. Sambaiah, I. Haase, A. Bacher, M. Cushman, M. Fischer, R. Ladenstein
Structural And Thermodynamic Insights Into The Binding Mode Of Five Novel Inhibitors Of Lumazine Synthase From Mycobacterium Tuberculosis.
Febs J. V. 273 4790 2006
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
1k: POTASSIUM ION (Kk)
1l: POTASSIUM ION (Kl)
1m: POTASSIUM ION (Km)
1n: POTASSIUM ION (Kn)
1o: POTASSIUM ION (Ko)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
3i: PHOSPHATE ION (PO4i)
3j: PHOSPHATE ION (PO4j)
4a: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGa)
4b: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGb)
4c: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGc)
4d: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGd)
4e: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGe)
4f: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGf)
4g: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGg)
4h: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGh)
4i: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGi)
4j: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
-1
Ligand/Ion
POTASSIUM ION
2
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
PO4
5
Ligand/Ion
PHOSPHATE ION
4
PUG
5
Ligand/Ion
3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)
[
close Hetero Component info
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC8 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
20: DC3 (SOFTWARE)
21: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:70 , HIS A:73 , THR A:110
BINDING SITE FOR RESIDUE K A1161
02
AC2
SOFTWARE
GLU A:155 , LEU A:156 , ARG A:157 , LEU H:156 , ARG H:157
BINDING SITE FOR RESIDUE K A1162
03
AC3
SOFTWARE
GLN A:86 , THR A:87 , HIS A:89 , HOH A:2064 , ARG B:128
BINDING SITE FOR RESIDUE PO4 A1163
04
AC4
SOFTWARE
ALA B:70 , HIS B:73 , THR B:110
BINDING SITE FOR RESIDUE K B1161
05
AC5
SOFTWARE
GLY B:85 , GLN B:86 , THR B:87 , HOH B:2065 , HOH B:2066 , ARG C:128
BINDING SITE FOR RESIDUE PO4 B1162
06
AC6
SOFTWARE
ALA C:70 , HIS C:73 , THR C:110 , HOH C:2015
BINDING SITE FOR RESIDUE K C1161
07
AC7
SOFTWARE
GLU C:155 , LEU C:156 , ARG C:157 , LEU F:156 , ARG F:157
BINDING SITE FOR RESIDUE K C1162
08
AC8
SOFTWARE
GLY C:85 , GLN C:86 , THR C:87 , ARG D:128
BINDING SITE FOR RESIDUE PO4 C1163
09
AC9
SOFTWARE
ALA D:70 , HIS D:73 , THR D:110 , HOH D:2026
BINDING SITE FOR RESIDUE K D1161
10
BC1
SOFTWARE
GLU D:155 , LEU D:156 , ARG D:157 , LEU J:156 , ARG J:157
BINDING SITE FOR RESIDUE K D1162
11
BC2
SOFTWARE
GLY D:85 , GLN D:86 , THR D:87 , HOH D:2055 , ARG E:128
BINDING SITE FOR RESIDUE PO4 D1163
12
BC3
SOFTWARE
ALA E:70 , HIS E:73 , THR E:110
BINDING SITE FOR RESIDUE K E1161
13
BC4
SOFTWARE
LEU E:156 , ARG E:157 , GLU I:155 , LEU I:156 , ARG I:157
BINDING SITE FOR RESIDUE K E1162
14
BC5
SOFTWARE
ARG A:128 , GLY E:85 , GLN E:86 , THR E:87
BINDING SITE FOR RESIDUE PO4 E1163
15
BC8
SOFTWARE
LEU B:156 , ARG B:157 , LEU G:156 , ARG G:157
BINDING SITE FOR RESIDUE K G1161
16
CC8
SOFTWARE
TRP A:27 , GLY A:58 , ALA A:59 , ILE A:60 , GLU A:61 , VAL A:81 , VAL A:82 , ILE A:83 , HIS A:89 , HOH A:2004 , HOH A:2063 , ALA B:113 , ASN B:114 , LYS B:138
BINDING SITE FOR RESIDUE PUG A 701
17
CC9
SOFTWARE
ALA B:59 , ILE B:60 , GLU B:61 , VAL B:81 , VAL B:82 , ILE B:83 , HIS B:89 , ALA C:113 , ASN C:114 , LYS C:138
BINDING SITE FOR RESIDUE PUG B 701
18
DC1
SOFTWARE
TRP C:27 , ALA C:59 , ILE C:60 , GLU C:61 , VAL C:81 , VAL C:82 , ILE C:83 , HIS C:89 , VAL C:93 , HOH C:2005 , ALA D:113 , ASN D:114 , LYS D:138
BINDING SITE FOR RESIDUE PUG C 701
19
DC2
SOFTWARE
TRP D:27 , GLY D:58 , ALA D:59 , ILE D:60 , GLU D:61 , VAL D:81 , VAL D:82 , ILE D:83 , HIS D:89 , ALA E:113 , ASN E:114 , LYS E:138
BINDING SITE FOR RESIDUE PUG D 701
20
DC3
SOFTWARE
ALA A:113 , ASN A:114 , LYS A:138 , TRP E:27 , GLY E:58 , ALA E:59 , ILE E:60 , GLU E:61 , VAL E:81 , VAL E:82 , ILE E:83 , HIS E:89 , HOH E:2065 , HOH E:2066
BINDING SITE FOR RESIDUE PUG E 701
21
DC9
SOFTWARE
GLN A:99 , GLN C:99 , GLN E:99
BINDING SITE FOR RESIDUE MPD C1164
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2c9bA00 (A:14-160)
1b: CATH_2c9bB00 (B:14-160)
1c: CATH_2c9bD00 (D:14-160)
1d: CATH_2c9bF00 (F:14-160)
1e: CATH_2c9bG00 (G:14-160)
1f: CATH_2c9bI00 (I:14-160)
1g: CATH_2c9bC00 (C:15-160)
1h: CATH_2c9bE00 (E:15-160)
1i: CATH_2c9bH00 (H:15-160)
1j: CATH_2c9bJ00 (J:15-160)
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(
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(8)
1a
2c9bA00
A:14-160
1b
2c9bB00
B:14-160
1c
2c9bD00
D:14-160
1d
2c9bF00
F:14-160
1e
2c9bG00
G:14-160
1f
2c9bI00
I:14-160
1g
2c9bC00
C:15-160
1h
2c9bE00
E:15-160
1i
2c9bH00
H:15-160
1j
2c9bJ00
J:15-160
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Pfam Domains
(0, 0)
Info
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Asymmetric Unit 1
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