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2C9B
Asym. Unit
Info
Asym.Unit (223 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)
Authors
:
E. Morgunova, B. Illarionov, G. Jin, I. Haase, M. Fischer, M. Cushman, A R. Ladenstein
Date
:
09 Dec 05 (Deposition) - 13 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Transferase, Inhibitor Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Morgunova, B. Illarionov, T. Sambaiah, I. Haase, A. Bacher, M. Cushman, M. Fischer, R. Ladenstein
Structural And Thermodynamic Insights Into The Binding Mode Of Five Novel Inhibitors Of Lumazine Synthase From Mycobacterium Tuberculosis.
Febs J. V. 273 4790 2006
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Hetero Components
(4, 37)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
1k: POTASSIUM ION (Kk)
1l: POTASSIUM ION (Kl)
1m: POTASSIUM ION (Km)
1n: POTASSIUM ION (Kn)
1o: POTASSIUM ION (Ko)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
3i: PHOSPHATE ION (PO4i)
3j: PHOSPHATE ION (PO4j)
4a: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGa)
4b: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGb)
4c: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGc)
4d: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGd)
4e: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGe)
4f: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGf)
4g: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGg)
4h: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGh)
4i: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGi)
4j: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (PUGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
15
Ligand/Ion
POTASSIUM ION
2
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
PO4
10
Ligand/Ion
PHOSPHATE ION
4
PUG
10
Ligand/Ion
3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:70 , HIS A:73 , THR A:110
BINDING SITE FOR RESIDUE K A1161
02
AC2
SOFTWARE
GLU A:155 , LEU A:156 , ARG A:157 , LEU H:156 , ARG H:157
BINDING SITE FOR RESIDUE K A1162
03
AC3
SOFTWARE
GLN A:86 , THR A:87 , HIS A:89 , HOH A:2064 , ARG B:128
BINDING SITE FOR RESIDUE PO4 A1163
04
AC4
SOFTWARE
ALA B:70 , HIS B:73 , THR B:110
BINDING SITE FOR RESIDUE K B1161
05
AC5
SOFTWARE
GLY B:85 , GLN B:86 , THR B:87 , HOH B:2065 , HOH B:2066 , ARG C:128
BINDING SITE FOR RESIDUE PO4 B1162
06
AC6
SOFTWARE
ALA C:70 , HIS C:73 , THR C:110 , HOH C:2015
BINDING SITE FOR RESIDUE K C1161
07
AC7
SOFTWARE
GLU C:155 , LEU C:156 , ARG C:157 , LEU F:156 , ARG F:157
BINDING SITE FOR RESIDUE K C1162
08
AC8
SOFTWARE
GLY C:85 , GLN C:86 , THR C:87 , ARG D:128
BINDING SITE FOR RESIDUE PO4 C1163
09
AC9
SOFTWARE
ALA D:70 , HIS D:73 , THR D:110 , HOH D:2026
BINDING SITE FOR RESIDUE K D1161
10
BC1
SOFTWARE
GLU D:155 , LEU D:156 , ARG D:157 , LEU J:156 , ARG J:157
BINDING SITE FOR RESIDUE K D1162
11
BC2
SOFTWARE
GLY D:85 , GLN D:86 , THR D:87 , HOH D:2055 , ARG E:128
BINDING SITE FOR RESIDUE PO4 D1163
12
BC3
SOFTWARE
ALA E:70 , HIS E:73 , THR E:110
BINDING SITE FOR RESIDUE K E1161
13
BC4
SOFTWARE
LEU E:156 , ARG E:157 , GLU I:155 , LEU I:156 , ARG I:157
BINDING SITE FOR RESIDUE K E1162
14
BC5
SOFTWARE
ARG A:128 , GLY E:85 , GLN E:86 , THR E:87
BINDING SITE FOR RESIDUE PO4 E1163
15
BC6
SOFTWARE
ALA F:70 , HIS F:73 , THR F:110 , HOH F:2017 , HOH F:2032
BINDING SITE FOR RESIDUE K F1161
16
BC7
SOFTWARE
GLY F:85 , GLN F:86 , THR F:87 , HOH F:2073 , HOH F:2074 , ARG G:128
BINDING SITE FOR RESIDUE PO4 F1162
17
BC8
SOFTWARE
LEU B:156 , ARG B:157 , LEU G:156 , ARG G:157
BINDING SITE FOR RESIDUE K G1161
18
BC9
SOFTWARE
ALA G:70 , HIS G:73 , THR G:110
BINDING SITE FOR RESIDUE K G1162
19
CC1
SOFTWARE
GLY G:85 , GLN G:86 , THR G:87 , HOH G:2081 , ARG H:128
BINDING SITE FOR RESIDUE PO4 G1163
20
CC2
SOFTWARE
ALA H:70 , HIS H:73 , THR H:110
BINDING SITE FOR RESIDUE K H1161
21
CC3
SOFTWARE
GLY H:85 , GLN H:86 , THR H:87 , HIS H:89 , HOH H:2055 , ARG I:128
BINDING SITE FOR RESIDUE PO4 H1162
22
CC4
SOFTWARE
ALA I:70 , HIS I:73 , THR I:110 , HOH I:2025 , HOH I:2036
BINDING SITE FOR RESIDUE K I1161
23
CC5
SOFTWARE
GLY I:85 , GLN I:86 , THR I:87 , HIS I:89
BINDING SITE FOR RESIDUE PO4 I1162
24
CC6
SOFTWARE
ALA J:70 , HIS J:73 , THR J:110 , HOH J:2030
BINDING SITE FOR RESIDUE K J1161
25
CC7
SOFTWARE
ARG F:128 , HOH F:2064 , GLY J:85 , GLN J:86 , THR J:87
BINDING SITE FOR RESIDUE PO4 J1162
26
CC8
SOFTWARE
TRP A:27 , GLY A:58 , ALA A:59 , ILE A:60 , GLU A:61 , VAL A:81 , VAL A:82 , ILE A:83 , HIS A:89 , HOH A:2004 , HOH A:2063 , ALA B:113 , ASN B:114 , LYS B:138
BINDING SITE FOR RESIDUE PUG A 701
27
CC9
SOFTWARE
ALA B:59 , ILE B:60 , GLU B:61 , VAL B:81 , VAL B:82 , ILE B:83 , HIS B:89 , ALA C:113 , ASN C:114 , LYS C:138
BINDING SITE FOR RESIDUE PUG B 701
28
DC1
SOFTWARE
TRP C:27 , ALA C:59 , ILE C:60 , GLU C:61 , VAL C:81 , VAL C:82 , ILE C:83 , HIS C:89 , VAL C:93 , HOH C:2005 , ALA D:113 , ASN D:114 , LYS D:138
BINDING SITE FOR RESIDUE PUG C 701
29
DC2
SOFTWARE
TRP D:27 , GLY D:58 , ALA D:59 , ILE D:60 , GLU D:61 , VAL D:81 , VAL D:82 , ILE D:83 , HIS D:89 , ALA E:113 , ASN E:114 , LYS E:138
BINDING SITE FOR RESIDUE PUG D 701
30
DC3
SOFTWARE
ALA A:113 , ASN A:114 , LYS A:138 , TRP E:27 , GLY E:58 , ALA E:59 , ILE E:60 , GLU E:61 , VAL E:81 , VAL E:82 , ILE E:83 , HIS E:89 , HOH E:2065 , HOH E:2066
BINDING SITE FOR RESIDUE PUG E 701
31
DC4
SOFTWARE
TRP F:27 , HIS F:28 , ALA F:59 , ILE F:60 , GLU F:61 , VAL F:81 , ILE F:83 , HIS F:89 , HOH F:2071 , HOH F:2072 , ALA G:113 , ASN G:114 , LYS G:138
BINDING SITE FOR RESIDUE PUG F 701
32
DC5
SOFTWARE
TRP G:27 , LEU G:57 , GLY G:58 , ALA G:59 , ILE G:60 , GLU G:61 , VAL G:81 , VAL G:82 , ILE G:83 , HIS G:89 , HOH G:2080 , HOH G:2081 , ALA H:113 , ASN H:114 , HOH H:2046
BINDING SITE FOR RESIDUE PUG G 701
33
DC6
SOFTWARE
TRP H:27 , HIS H:28 , GLY H:58 , ALA H:59 , ILE H:60 , GLU H:61 , VAL H:81 , VAL H:82 , ILE H:83 , HIS H:89 , ASN I:114
BINDING SITE FOR RESIDUE PUG H 701
34
DC7
SOFTWARE
TRP I:27 , ALA I:59 , ILE I:60 , GLU I:61 , VAL I:81 , VAL I:82 , ILE I:83 , HIS I:89 , HOH I:2059 , HOH I:2060 , ALA J:113 , ASN J:114
BINDING SITE FOR RESIDUE PUG I 701
35
DC8
SOFTWARE
ALA F:113 , ASN F:114 , LYS F:138 , TRP J:27 , HIS J:28 , GLY J:58 , ALA J:59 , ILE J:60 , GLU J:61 , VAL J:81 , VAL J:82 , ILE J:83 , HIS J:89
BINDING SITE FOR RESIDUE PUG J 701
36
DC9
SOFTWARE
GLN A:99 , GLN C:99 , GLN E:99
BINDING SITE FOR RESIDUE MPD C1164
37
EC1
SOFTWARE
GLN F:99 , GLN G:99 , GLN H:99 , GLN J:99
BINDING SITE FOR RESIDUE MPD J1163
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2c9bA00 (A:14-160)
1b: CATH_2c9bB00 (B:14-160)
1c: CATH_2c9bD00 (D:14-160)
1d: CATH_2c9bF00 (F:14-160)
1e: CATH_2c9bG00 (G:14-160)
1f: CATH_2c9bI00 (I:14-160)
1g: CATH_2c9bC00 (C:15-160)
1h: CATH_2c9bE00 (E:15-160)
1i: CATH_2c9bH00 (H:15-160)
1j: CATH_2c9bJ00 (J:15-160)
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Classes
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(8)
1a
2c9bA00
A:14-160
1b
2c9bB00
B:14-160
1c
2c9bD00
D:14-160
1d
2c9bF00
F:14-160
1e
2c9bG00
G:14-160
1f
2c9bI00
I:14-160
1g
2c9bC00
C:15-160
1h
2c9bE00
E:15-160
1i
2c9bH00
H:15-160
1j
2c9bJ00
J:15-160
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Pfam Domains
(0, 0)
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all PFAM domains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (223 KB)
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