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2C97
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO 4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL) BUTYL PHOSPHATE
Authors
:
E. Morgunova, B. Illarionov, G. Jin, I. Haase, M. Fischer, M. Cushman, A R. Ladenstein
Date
:
09 Dec 05 (Deposition) - 13 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Transferase, Riboflavin Biosynthesis, Inhibitor Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Morgunova, B. Illarionov, T. Sambaiah, I. Haase, A. Bacher, M. Cushman, M. Fischer, R. Ladenstein
Structural And Thermodynamic Insights Into The Binding Mode Of Five Novel Inhibitors Of Lumazine Synthase From Mycobacterium Tuberculosis.
Febs J. V. 273 4790 2006
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Hetero Components
(5, 33)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: DITHIANE DIOL (DTDa)
3a: 4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETR... (JCLa)
3b: 4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETR... (JCLb)
3c: 4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETR... (JCLc)
3d: 4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETR... (JCLd)
3e: 4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETR... (JCLe)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
5e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
5f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
DTD
1
Ligand/Ion
DITHIANE DIOL
3
JCL
5
Ligand/Ion
4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL) BUTYL PHOSPHATE
4
K
16
Ligand/Ion
POTASSIUM ION
5
MPD
6
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:70 , HIS A:73 , THR A:110 , HOH A:2049 , HOH A:2081
BINDING SITE FOR RESIDUE K A1161
02
AC2
SOFTWARE
ALA A:34 , ALA A:129 , GLY A:130 , ASP A:137 , HOH A:2019
BINDING SITE FOR RESIDUE K A1162
03
AC3
SOFTWARE
GLU A:155 , LEU A:156 , ARG A:157 , HOH A:2117
BINDING SITE FOR RESIDUE K A1163
04
AC4
SOFTWARE
ARG A:84 , ASN A:120 , HOH A:2062 , HOH A:2092
BINDING SITE FOR RESIDUE K A1164
05
AC5
SOFTWARE
HOH A:2124
BINDING SITE FOR RESIDUE ACT A1165
06
AC6
SOFTWARE
ALA B:70 , HIS B:73 , THR B:110 , HOH B:2068
BINDING SITE FOR RESIDUE K B1161
07
AC7
SOFTWARE
ALA B:34 , GLY B:38 , ALA B:129 , GLY B:130 , ASP B:137 , HOH B:2015 , HOH B:2082
BINDING SITE FOR RESIDUE K B1162
08
AC8
SOFTWARE
GLU B:155 , LEU B:156 , ARG B:157 , HOH B:2095 , LEU E:156 , ARG E:157 , HOH E:2103
BINDING SITE FOR RESIDUE K B1163
09
AC9
SOFTWARE
ARG B:84 , ASN B:120
BINDING SITE FOR RESIDUE K B1164
10
BC1
SOFTWARE
ALA C:70 , HIS C:73 , THR C:110 , HOH C:2061
BINDING SITE FOR RESIDUE K C1161
11
BC2
SOFTWARE
GLU C:155 , LEU C:156 , ARG C:157 , GLU D:155 , LEU D:156 , ARG D:157 , HOH D:2101
BINDING SITE FOR RESIDUE K C1162
12
BC3
SOFTWARE
ARG C:84 , ASN C:120
BINDING SITE FOR RESIDUE K C1163
13
BC4
SOFTWARE
LEU C:57
BINDING SITE FOR RESIDUE ACT C1164
14
BC5
SOFTWARE
ALA D:70 , HIS D:73 , THR D:110 , HOH D:2020 , HOH D:2048 , HOH D:2073
BINDING SITE FOR RESIDUE K D1161
15
BC6
SOFTWARE
ARG D:84 , ASN D:120 , HOH D:2053
BINDING SITE FOR RESIDUE K D1162
16
BC7
SOFTWARE
SER D:26 , ARG D:55 , HOH D:2107 , HOH E:2098
BINDING SITE FOR RESIDUE ACT D1163
17
BC8
SOFTWARE
ALA E:70 , HIS E:73 , THR E:110 , HOH E:2022 , HOH E:2047 , HOH E:2073
BINDING SITE FOR RESIDUE K E1161
18
BC9
SOFTWARE
ALA E:34 , ALA E:129 , GLY E:130 , ASP E:137 , HOH E:2016 , HOH E:2017
BINDING SITE FOR RESIDUE K E1162
19
CC1
SOFTWARE
ARG E:84 , ASN E:120 , HOH E:2053
BINDING SITE FOR RESIDUE K E1163
20
CC2
SOFTWARE
TRP A:27 , HIS A:28 , GLY A:58 , ALA A:59 , VAL A:81 , VAL A:82 , ILE A:83 , GLY A:85 , GLN A:86 , THR A:87 , HOH A:2010 , HOH A:2058 , HOH A:2119 , HOH A:2120 , HOH A:2121 , HOH A:2122 , HOH A:2123 , ARG B:128
BINDING SITE FOR RESIDUE JCL A 701
21
CC3
SOFTWARE
HIS B:28 , GLY B:58 , ALA B:59 , VAL B:81 , VAL B:82 , ILE B:83 , GLY B:85 , GLN B:86 , THR B:87 , HOH B:2006 , HOH B:2097 , HOH B:2098 , HOH B:2099 , HOH B:2100 , ARG C:128
BINDING SITE FOR RESIDUE JCL B 701
22
CC4
SOFTWARE
HIS C:28 , GLY C:58 , ALA C:59 , VAL C:81 , VAL C:82 , ILE C:83 , GLY C:85 , GLN C:86 , THR C:87 , HOH C:2005 , HOH C:2078 , HOH C:2079 , HOH C:2080 , ARG D:128 , HOH D:2078 , HOH D:2093
BINDING SITE FOR RESIDUE JCL C 701
23
CC5
SOFTWARE
TRP D:27 , HIS D:28 , GLY D:58 , ALA D:59 , VAL D:81 , VAL D:82 , ILE D:83 , GLY D:85 , GLN D:86 , THR D:87 , HOH D:2005 , HOH D:2009 , HOH D:2104 , HOH D:2105 , HOH D:2106 , ARG E:128
BINDING SITE FOR RESIDUE JCL D 701
24
CC6
SOFTWARE
ARG A:128 , HOH A:2085 , HOH A:2108 , TRP E:27 , HIS E:28 , GLY E:58 , ALA E:59 , VAL E:81 , VAL E:82 , ILE E:83 , GLY E:85 , GLN E:86 , THR E:87 , HOH E:2007 , HOH E:2052 , HOH E:2106 , HOH E:2107 , HOH E:2108 , HOH E:2109 , HOH E:2110
BINDING SITE FOR RESIDUE JCL E 701
25
CC7
SOFTWARE
VAL D:42 , GLY D:45 , LYS E:41 , VAL E:42 , GLY E:45 , CYS E:46
BINDING SITE FOR RESIDUE DTD E1166
26
CC8
SOFTWARE
THR A:98 , LEU A:101 , ASN A:114 , HOH A:2072
BINDING SITE FOR RESIDUE MPD A1166
27
CC9
SOFTWARE
GLN A:99 , GLN B:99 , GLN C:99 , GLN D:99
BINDING SITE FOR RESIDUE MPD A1167
28
DC1
SOFTWARE
HIS A:89 , ALA A:96 , THR B:98 , LEU B:101 , ASN B:114 , HOH B:2059
BINDING SITE FOR RESIDUE MPD B1165
29
DC2
SOFTWARE
TYR B:92 , VAL C:97 , THR C:98 , LEU C:101 , ASN C:114 , HOH C:2081
BINDING SITE FOR RESIDUE MPD C1165
30
DC3
SOFTWARE
ILE C:60 , TYR C:92 , THR D:98 , LEU D:101 , ASN D:114
BINDING SITE FOR RESIDUE MPD D1164
31
DC4
SOFTWARE
THR E:98 , ASN E:114 , VAL E:116
BINDING SITE FOR RESIDUE MPD E1165
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_2c97A00 (A:14-160)
1b: CATH_2c97B00 (B:14-160)
1c: CATH_2c97D00 (D:14-160)
1d: CATH_2c97C00 (C:15-160)
1e: CATH_2c97E00 (E:15-160)
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Classes
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(8)
1a
2c97A00
A:14-160
1b
2c97B00
B:14-160
1c
2c97D00
D:14-160
1d
2c97C00
C:15-160
1e
2c97E00
E:15-160
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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