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2C92
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL) PENTANE 1 PHOSPHATE
Authors
:
E. Morgunova, B. Illarionov, G. Jin, I. Haase, M. Fischer, M. Cushman, A. Bacher, R. Ladenstein
Date
:
09 Dec 05 (Deposition) - 13 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Transferase, Riboflavin Biosynthesis, Mycobacterium Tuberculosis, Lumazine Synthase, Inhibitor Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Morgunova, B. Illarionov, T. Sambaiah, I. Haase, A. Bacher, M. Cushman, M. Fischer, R. Ladenstein
Structural And Thermodynamic Insights Into The Binding Mode Of Five Novel Inhibitors Of Lumazine Synthase From Mycobacterium Tuberculosis.
Febs J. V. 273 4790 2006
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-D... (DTUa)
1b: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-D... (DTUb)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
2f: POTASSIUM ION (Kf)
2g: POTASSIUM ION (Kg)
2h: POTASSIUM ION (Kh)
2i: POTASSIUM ION (Ki)
2j: POTASSIUM ION (Kj)
2k: POTASSIUM ION (Kk)
2l: POTASSIUM ION (Kl)
2m: POTASSIUM ION (Km)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4a: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (TP6a)
4b: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (TP6b)
4c: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (TP6c)
4d: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (TP6d)
4e: 3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,... (TP6e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTU
2
Ligand/Ion
(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
2
K
13
Ligand/Ion
POTASSIUM ION
3
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
TP6
5
Ligand/Ion
3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL) 1-PHOSPHATE
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:70 , HIS A:73 , THR A:110 , HOH A:2027 , HOH A:2055 , HOH A:2093
BINDING SITE FOR RESIDUE K A1161
02
AC2
SOFTWARE
ALA A:34 , ALA A:129 , GLY A:130 , ASP A:137 , HOH B:2038 , HOH B:2040
BINDING SITE FOR RESIDUE K A1162
03
AC3
SOFTWARE
GLU A:155 , LEU A:156 , ARG A:157 , HOH A:2139
BINDING SITE FOR RESIDUE K A1163
04
AC4
SOFTWARE
ALA B:70 , HIS B:73 , THR B:110 , HOH B:2055 , HOH B:2067 , HOH B:2098
BINDING SITE FOR RESIDUE K B1161
05
AC5
SOFTWARE
ALA B:34 , GLY B:38 , ALA B:129 , GLY B:130 , ASP B:137 , HOH B:2025 , HOH B:2026
BINDING SITE FOR RESIDUE K B1162
06
AC6
SOFTWARE
GLU B:155 , LEU B:156 , ARG B:157 , HOH B:2138 , GLU E:155 , LEU E:156 , ARG E:157 , HOH E:2137
BINDING SITE FOR RESIDUE K B1163
07
AC7
SOFTWARE
ALA C:70 , HIS C:73 , THR C:110 , HOH C:2016 , HOH C:2027 , HOH C:2070
BINDING SITE FOR RESIDUE K C1161
08
AC8
SOFTWARE
ALA C:34 , GLY C:38 , ALA C:129 , GLY C:130
BINDING SITE FOR RESIDUE K C1162
09
AC9
SOFTWARE
GLU C:155 , LEU C:156 , ARG C:157 , HOH C:2099 , HOH C:2101 , GLU D:155 , LEU D:156 , ARG D:157
BINDING SITE FOR RESIDUE K C1163
10
BC1
SOFTWARE
ALA D:70 , HIS D:73 , THR D:110 , HOH D:2023 , HOH D:2051 , HOH D:2083
BINDING SITE FOR RESIDUE K D1161
11
BC2
SOFTWARE
ALA D:34 , ALA D:129 , GLY D:130 , ASP D:137 , HOH D:2017
BINDING SITE FOR RESIDUE K D1162
12
BC3
SOFTWARE
ALA E:70 , HIS E:73 , THR E:110 , HOH E:2029 , HOH E:2064 , HOH E:2102
BINDING SITE FOR RESIDUE K E1161
13
BC4
SOFTWARE
ALA E:34 , ALA E:129 , GLY E:130 , ASP E:137 , HOH E:2022 , HOH E:2023
BINDING SITE FOR RESIDUE K E1162
14
BC5
SOFTWARE
SER A:25 , TRP A:27 , HIS A:28 , GLY A:58 , ALA A:59 , ILE A:60 , GLU A:61 , VAL A:81 , VAL A:82 , ILE A:83 , GLY A:85 , GLN A:86 , THR A:87 , HOH A:2064 , HOH A:2142 , HOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2146 , HOH A:2147 , HOH A:2148 , ALA B:113 , ASN B:114 , ARG B:128 , LYS B:138 , HOH B:2127
BINDING SITE FOR RESIDUE TP6 A 701
15
BC6
SOFTWARE
SER B:25 , TRP B:27 , HIS B:28 , GLY B:58 , ALA B:59 , ILE B:60 , GLU B:61 , VAL B:81 , VAL B:82 , ILE B:83 , GLY B:85 , GLN B:86 , THR B:87 , HOH B:2139 , HOH B:2140 , HOH B:2141 , HOH B:2142 , HOH B:2143 , HOH B:2144 , HOH B:2145 , HOH B:2146 , ALA C:113 , ASN C:114 , ARG C:128
BINDING SITE FOR RESIDUE TP6 B 701
16
BC7
SOFTWARE
SER C:25 , TRP C:27 , HIS C:28 , GLY C:58 , ALA C:59 , ILE C:60 , GLU C:61 , VAL C:81 , VAL C:82 , ILE C:83 , GLY C:85 , GLN C:86 , THR C:87 , HOH C:2007 , HOH C:2046 , HOH C:2050 , HOH C:2103 , HOH C:2104 , HOH C:2106 , ALA D:113 , ASN D:114 , ARG D:128 , LYS D:138
BINDING SITE FOR RESIDUE TP6 C 701
17
BC8
SOFTWARE
SER D:25 , TRP D:27 , HIS D:28 , GLY D:58 , ALA D:59 , ILE D:60 , GLU D:61 , VAL D:81 , VAL D:82 , ILE D:83 , GLY D:85 , GLN D:86 , THR D:87 , HOH D:2009 , HOH D:2056 , HOH D:2115 , HOH D:2117 , HOH D:2118 , HOH D:2119 , HOH D:2120 , ALA E:113 , ASN E:114 , ARG E:128 , LYS E:138
BINDING SITE FOR RESIDUE TP6 D 701
18
BC9
SOFTWARE
ALA D:15 , CYS D:46 , LEU D:147 , LEU D:151
BINDING SITE FOR RESIDUE DTU D1163
19
CC1
SOFTWARE
ALA A:113 , ASN A:114 , ARG A:128 , HOH A:2127 , SER E:25 , TRP E:27 , HIS E:28 , GLY E:58 , ALA E:59 , ILE E:60 , GLU E:61 , VAL E:81 , VAL E:82 , ILE E:83 , GLY E:85 , GLN E:86 , THR E:87 , HOH E:2139 , HOH E:2140 , HOH E:2141 , HOH E:2142 , HOH E:2143 , HOH E:2144 , HOH E:2146
BINDING SITE FOR RESIDUE TP6 E 701
20
CC2
SOFTWARE
ALA E:15 , CYS E:46 , LEU E:151
BINDING SITE FOR RESIDUE DTU E1163
21
CC3
SOFTWARE
GLN A:99 , GLN C:99 , GLN D:99
BINDING SITE FOR RESIDUE MPD E1164
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_2c92A00 (A:14-160)
1b: CATH_2c92B00 (B:14-160)
1c: CATH_2c92C00 (C:14-160)
1d: CATH_2c92D00 (D:14-160)
1e: CATH_2c92E00 (E:15-160)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(8)
1a
2c92A00
A:14-160
1b
2c92B00
B:14-160
1c
2c92C00
C:14-160
1d
2c92D00
D:14-160
1e
2c92E00
E:15-160
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Pfam Domains
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