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2C78
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
EF-TU COMPLEXED WITH A GTP ANALOG AND THE ANTIBIOTIC PULVOMYCIN
Authors
:
A. Parmeggiani, I. M. Krab, S. Okamura, R. C. Nielsen, J. Nyborg, P. Nissen
Date
:
18 Nov 05 (Deposition) - 16 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Gtpase, Translation Elongation Factor, Protein Synthesis, Antibiotic, Gtp-Binding, Nucleotide-Binding, Phosphorylation, Protein Biosynthesis, Elongation Factor
(Keyword Search:
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Reference
:
A. Parmeggiani, I. M. Krab, S. Okamura, R. C. Nielsen, J. Nyborg, P. Nissen
Structural Basis Of The Action Of Pulvomycin And Ge2270 A On Elongation Factor Tu.
Biochemistry V. 45 6846 2006
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
3a: (1S,2S,3E,5E,7E,10S,11S,12S)-12-[(... (PULa)
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No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
PUL
1
Ligand/Ion
(1S,2S,3E,5E,7E,10S,11S,12S)-12-[(2R,4E,6E,8Z,10R,12E,14E,16Z,18S,19Z)-10,18-DIHYDROXY-12,16,19-TRIMETHYL-11,22-DIOXOOXACYCLODOCOSA-4,6,8,12,14,16,19-HEPTAEN-2-YL]-2,11-DIHYDROXY-1,10-DIMETHYL-9-OXOTRIDECA-3,5,7-TRIEN-1-YL 6-DEOXY-2,4-DI-O-METHYL-BETA-L-GALACTOPYRANOSIDE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:25 , THR A:62 , GNP A:1406 , HOH A:2010 , HOH A:2035
BINDING SITE FOR RESIDUE MG A1407
2
AC2
SOFTWARE
VAL A:20 , ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ILE A:61 , THR A:62 , GLY A:84 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , MG A:1407 , HOH A:2010 , HOH A:2035 , HOH A:2046 , HOH A:2113 , HOH A:2319 , HOH A:2320 , HOH A:2321 , HOH A:2322
BINDING SITE FOR RESIDUE GNP A1406
3
AC3
SOFTWARE
ILE A:89 , THR A:94 , ALA A:97 , GLN A:98 , GLU A:226 , PHE A:229 , GLY A:240 , GLU A:271 , MET A:272 , HIS A:273 , VAL A:286 , ARG A:300 , TYR A:343 , PHE A:344 , ARG A:345 , THR A:346 , ARG A:385 , ALA A:387 , ARG A:389 , HOH A:2324 , HOH A:2325 , HOH A:2326 , HOH A:2327
BINDING SITE FOR RESIDUE PUL A1408
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:51-66)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFTU1_THET8
52-67
1
A:51-66
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2c78a2 (A:313-405)
2a: SCOP_d2c78a1 (A:213-312)
3a: SCOP_d2c78a3 (A:9-212)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Thermus thermophilus HB8 [TaxId: 300852]
(2)
1a
d2c78a2
A:313-405
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Thermus thermophilus HB8 [TaxId: 300852]
(2)
2a
d2c78a1
A:213-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Thermus thermophilus HB8 [TaxId: 300852]
(2)
3a
d2c78a3
A:9-212
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2c78A01 (A:9-213)
2a: CATH_2c78A03 (A:311-404)
2b: CATH_2c78A02 (A:216-307)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(3)
1a
2c78A01
A:9-213
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(3)
2a
2c78A03
A:311-404
2b
2c78A02
A:216-307
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Pfam Domains
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Chain A
Asymmetric Unit 1
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