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2C64
Asym. Unit
Info
Asym.Unit (175 KB)
Biol.Unit 1 (169 KB)
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(1)
Title
:
MAO INHIBITION BY RASAGILINE ANALOGUES
Authors
:
C. Binda, F. Hubalek, M. Li, Y. Herzig, J. Sterling, D. E. Edmondson, A. Mattevi
Date
:
07 Nov 05 (Deposition) - 04 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Acetylation, Enantioselectivity, Fad, Flavin, Flavoprotein, Human Monoamine Oxidase, Inhibitor Binding, Mitochondrion, Rasagiline, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Binda, F. Hubalek, M. Li, Y. Herzig, J. Sterling, D. E. Edmondson, A. Mattevi
Binding Of Rasagiline-Related Inhibitors To Human Monoamine Oxidases: A Kinetic And Crystallographic Analysis.
J. Med. Chem. V. 48 8148 2005
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: (1R)-6-HYDROXY-N-METHYL-N-[(1Z)-PR... (MA0a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MA0
1
Ligand/Ion
(1R)-6-HYDROXY-N-METHYL-N-[(1Z)-PROP-2-EN-1-YLIDENE]INDAN-1-AMINIUM
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:11 , GLY A:13 , ILE A:14 , SER A:15 , LEU A:33 , GLU A:34 , ALA A:35 , ARG A:36 , GLY A:40 , GLY A:41 , ARG A:42 , THR A:43 , GLY A:58 , SER A:59 , TYR A:60 , ARG A:233 , PRO A:234 , VAL A:235 , ALA A:263 , ILE A:264 , TRP A:388 , TYR A:393 , CYS A:397 , TYR A:398 , GLY A:425 , THR A:426 , GLY A:434 , TYR A:435 , MET A:436 , ALA A:439 , HOH A:2055 , HOH A:2066 , HOH A:2111 , HOH A:2112 , HOH A:2113 , HOH A:2114
BINDING SITE FOR RESIDUE FAD A1502
2
AC2
SOFTWARE
GLY B:11 , GLY B:13 , ILE B:14 , SER B:15 , LEU B:33 , GLU B:34 , ALA B:35 , ARG B:36 , GLY B:40 , GLY B:41 , ARG B:42 , GLY B:58 , SER B:59 , TYR B:60 , VAL B:235 , ALA B:263 , ILE B:264 , TRP B:388 , TYR B:393 , CYS B:397 , TYR B:398 , GLY B:425 , THR B:426 , GLY B:434 , TYR B:435 , MET B:436 , ALA B:439 , MA0 B:1498 , HOH B:2092 , HOH B:2105 , HOH B:2147 , HOH B:2174 , HOH B:2176 , HOH B:2177 , HOH B:2178 , HOH B:2179
BINDING SITE FOR RESIDUE FAD B1497
3
AC3
SOFTWARE
LEU B:171 , CYS B:172 , ILE B:198 , GLN B:206 , TYR B:326 , PHE B:343 , TYR B:398 , TYR B:435 , FAD B:1497
BINDING SITE FOR RESIDUE MA0 B1498
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(15, 30)
Info
All Exons
Exon 1.1a (A:3-16 | B:3-16)
Exon 1.4 (A:16-47 | B:16-47)
Exon 1.5 (A:48-93 | B:48-93)
Exon 1.6 (A:94-128 | B:94-128)
Exon 1.7 (A:129-159 | B:129-159)
Exon 1.8b (A:159-206 | B:159-206)
Exon 1.9 (A:207-256 | B:207-256)
Exon 1.10 (A:257-310 | B:257-310)
Exon 1.11 (A:310-342 | B:310-342)
Exon 1.12 (A:342-360 | B:342-360)
Exon 1.13 (A:360-379 | B:360-379)
Exon 1.14 (A:380-412 | B:380-412)
Exon 1.15a (A:412-449 | B:412-449)
Exon 1.16 (A:450-470 | B:450-470)
Exon 1.17b (A:471-501 | B:471-496)
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8b
07: Boundary 1.8b/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
13: Boundary 1.14/1.15a
14: Boundary 1.15a/1.16
15: Boundary 1.16/1.17b
16: Boundary 1.17b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000378069
1a
ENSE00001476175
X:43741693-43741500
194
AOFB_HUMAN
1-16
16
2
A:3-16
B:3-16
14
14
1.4
ENST00000378069
4
ENSE00000847672
X:43703010-43702916
95
AOFB_HUMAN
16-47
32
2
A:16-47
B:16-47
32
32
1.5
ENST00000378069
5
ENSE00000386774
X:43698251-43698114
138
AOFB_HUMAN
48-93
46
2
A:48-93
B:48-93
46
46
1.6
ENST00000378069
6
ENSE00001035779
X:43662651-43662547
105
AOFB_HUMAN
94-128
35
2
A:94-128
B:94-128
35
35
1.7
ENST00000378069
7
ENSE00001035776
X:43661510-43661419
92
AOFB_HUMAN
129-159
31
2
A:129-159
B:129-159
31
31
1.8b
ENST00000378069
8b
ENSE00001035764
X:43656513-43656372
142
AOFB_HUMAN
159-206
48
2
A:159-206
B:159-206
48
48
1.9
ENST00000378069
9
ENSE00001035777
X:43655135-43654986
150
AOFB_HUMAN
207-256
50
2
A:207-256
B:207-256
50
50
1.10
ENST00000378069
10
ENSE00001035772
X:43652825-43652666
160
AOFB_HUMAN
257-310
54
2
A:257-310
B:257-310
54
54
1.11
ENST00000378069
11
ENSE00001035775
X:43640791-43640695
97
AOFB_HUMAN
310-342
33
2
A:310-342
B:310-342
33
33
1.12
ENST00000378069
12
ENSE00001035768
X:43639642-43639589
54
AOFB_HUMAN
342-360
19
2
A:342-360
B:342-360
19
19
1.13
ENST00000378069
13
ENSE00001035781
X:43637986-43637929
58
AOFB_HUMAN
360-379
20
2
A:360-379
B:360-379
20
20
1.14
ENST00000378069
14
ENSE00001700569
X:43634519-43634422
98
AOFB_HUMAN
380-412
33
2
A:380-412
B:380-412
33
33
1.15a
ENST00000378069
15a
ENSE00001712216
X:43628665-43628554
112
AOFB_HUMAN
412-449
38
2
A:412-449
B:412-449
38
38
1.16
ENST00000378069
16
ENSE00000668638
X:43627963-43627901
63
AOFB_HUMAN
450-470
21
2
A:450-470
B:450-470
21
21
1.17b
ENST00000378069
17b
ENSE00001332403
X:43626865-43625858
1008
AOFB_HUMAN
471-520
50
2
A:471-501
B:471-496
31
26
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2c64a2 (A:290-401)
1b: SCOP_d2c64b2 (B:290-401)
2a: SCOP_d2c64a1 (A:3-289,A:402-501)
2b: SCOP_d2c64b1 (B:3-289,B:402-496)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
L-aminoacid/polyamine oxidase
(66)
Protein domain
:
Monoamine oxidase B
(38)
Human (Homo sapiens) [TaxId: 9606]
(37)
1a
d2c64a2
A:290-401
1b
d2c64b2
B:290-401
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Monoamine oxidase B
(38)
Human (Homo sapiens) [TaxId: 9606]
(37)
2a
d2c64a1
A:3-289,A:402-501
2b
d2c64b1
B:3-289,B:402-496
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2c64A01 (A:3-41,A:63-78,A:211-289,A:403-463)
1b: CATH_2c64B01 (B:3-41,B:63-78,B:211-289,B:403-463)
2a: CATH_2c64A02 (A:42-62,A:79-107,A:200-210,A:290-402)
2b: CATH_2c64B02 (B:42-62,B:79-107,B:200-210,B:290-402)
3a: CATH_2c64A03 (A:108-199)
3b: CATH_2c64B03 (B:108-199)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Human (Homo sapiens)
(57)
1a
2c64A01
A:3-41,A:63-78,A:211-289,A:403-463
1b
2c64B01
B:3-41,B:63-78,B:211-289,B:403-463
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Polyamine Oxidase; Chain A, domain 2
(62)
Homologous Superfamily
:
[code=3.90.660.10, no name defined]
(61)
Human (Homo sapiens)
(29)
2a
2c64A02
A:42-62,A:79-107,A:200-210,A:290-402
2b
2c64B02
B:42-62,B:79-107,B:200-210,B:290-402
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Guanine Nucleotide Dissociation Inhibitor; domain 1
(50)
Homologous Superfamily
:
Guanine Nucleotide Dissociation Inhibitor, domain 1
(50)
Human (Homo sapiens)
(29)
3a
2c64A03
A:108-199
3b
2c64B03
B:108-199
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Pfam Domains
(0, 0)
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all PFAM domains
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