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2C4U
Asym. Unit
Info
Asym.Unit (538 KB)
Biol.Unit 1 (532 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE APO FORM OF THE 5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE ENZYME FROM STREPTOMYCES CATTLEYA
Authors
:
A. R. Mcewan, H. Deng, D. A. Robinson, W. Delaurentis, R. P. Mcglinchey, D. O'Hagan, J. H. Naismith
Date
:
22 Oct 05 (Deposition) - 12 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Transferase, Fluorinase, Apo, Sam, Fda, 5'-Fluorodeoxyadanosine Synthase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. L. Cobb, H. Deng, A. R. Mcewan, J. H. Naismith, D. O'Hagan, D. A. Robinson
Substrate Specificity In Enzymatic Fluorination. The Fluorinase From Streptomyces Cattleya Accepts 2'-Deoxyadenosine Substrates.
Org. Biomol. Chem. V. 4 1458 2006
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:50 , TYR A:77 , PRO A:78 , HOH A:2082 , PHE B:254 , ALA B:279 , HOH B:2072
BINDING SITE FOR RESIDUE GOL A1299
02
AC2
SOFTWARE
THR A:19 , LYS A:28 , ASP A:42 , HOH A:2083 , HOH A:2084 , ASP B:42 , VAL B:43
BINDING SITE FOR RESIDUE GOL A1300
03
AC3
SOFTWARE
PHE A:213 , ASN A:215 , PHE A:254 , ARG A:277 , ALA A:279 , HOH A:2085 , TRP C:50 , PRO C:78
BINDING SITE FOR RESIDUE GOL A1301
04
AC4
SOFTWARE
THR B:19 , LYS B:28 , ASP B:42 , HOH B:2086 , HOH B:2087 , HOH B:2088 , ASP C:42 , VAL C:43
BINDING SITE FOR RESIDUE GOL B1299
05
AC5
SOFTWARE
ASP A:42 , HOH A:2015 , THR C:19 , LYS C:28 , ASP C:42 , HOH C:2061
BINDING SITE FOR RESIDUE GOL C1299
06
AC6
SOFTWARE
TRP B:50 , TYR B:77 , PRO B:78 , PHE C:213 , ASN C:215 , PHE C:254 , ALA C:279
BINDING SITE FOR RESIDUE GOL C1300
07
AC7
SOFTWARE
LYS D:28 , ASP D:42 , ASP E:42 , VAL E:43 , GOL F:1299
BINDING SITE FOR RESIDUE GOL D1299
08
AC8
SOFTWARE
ASP D:16 , TYR D:77 , THR D:80 , PHE D:156 , TYR D:157 , SER D:158 , PHE E:213
BINDING SITE FOR RESIDUE GOL D1300
09
AC9
SOFTWARE
THR E:19 , LYS E:28 , ASP E:42 , HOH E:2004 , ASP F:42 , GOL F:1299
BINDING SITE FOR RESIDUE GOL E1299
10
BC1
SOFTWARE
ASP D:42 , VAL D:43 , GOL D:1299 , HOH D:2011 , GOL E:1299 , LYS F:28 , ASP F:42
BINDING SITE FOR RESIDUE GOL F1299
11
BC2
SOFTWARE
TRP E:50 , PRO E:78 , PHE F:213 , ASN F:215 , PHE F:254 , ARG F:277 , ALA F:279 , ALA F:280
BINDING SITE FOR RESIDUE GOL F1300
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2c4ua1 (A:193-298)
1b: SCOP_d2c4ub1 (B:193-298)
1c: SCOP_d2c4uc1 (C:193-298)
1d: SCOP_d2c4ud1 (D:193-298)
1e: SCOP_d2c4ue1 (E:193-298)
1f: SCOP_d2c4uf1 (F:193-298)
2a: SCOP_d2c4ua2 (A:8-192)
2b: SCOP_d2c4ub2 (B:8-192)
2c: SCOP_d2c4uc2 (C:8-192)
2d: SCOP_d2c4ud2 (D:8-192)
2e: SCOP_d2c4ue2 (E:8-192)
2f: SCOP_d2c4uf2 (F:8-192)
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Protein Domains
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(
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Organisms
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)
(
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Class
:
All beta proteins
(24004)
Fold
:
Bacterial fluorinating enzyme, C-terminal domain
(16)
Superfamily
:
Bacterial fluorinating enzyme, C-terminal domain
(16)
Family
:
Bacterial fluorinating enzyme, C-terminal domain
(10)
Protein domain
:
5'-fluoro-5'-deoxyadenosine synthase
(10)
Streptomyces cattleya [TaxId: 29303]
(10)
1a
d2c4ua1
A:193-298
1b
d2c4ub1
B:193-298
1c
d2c4uc1
C:193-298
1d
d2c4ud1
D:193-298
1e
d2c4ue1
E:193-298
1f
d2c4uf1
F:193-298
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Bacterial fluorinating enzyme, N-terminal domain
(16)
Superfamily
:
Bacterial fluorinating enzyme, N-terminal domain
(16)
Family
:
Bacterial fluorinating enzyme, N-terminal domain
(14)
Protein domain
:
5'-fluoro-5'-deoxyadenosine synthase
(10)
Streptomyces cattleya [TaxId: 29303]
(10)
2a
d2c4ua2
A:8-192
2b
d2c4ub2
B:8-192
2c
d2c4uc2
C:8-192
2d
d2c4ud2
D:8-192
2e
d2c4ue2
E:8-192
2f
d2c4uf2
F:8-192
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (538 KB)
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