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2C4L
Biol. Unit 1
Info
Asym.Unit (81 KB)
Biol.Unit 1 (278 KB)
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(1)
Title
:
STRUCTURE OF NEURAMINIDASE SUBTYPE N9 COMPLEXED WITH 30 MM SIALIC ACID (NANA, NEU5AC), CRYSTAL SOAKED FOR 24 HOURS AT 291 K AND FINALLY BACKSOAKED FOR 30 MIN IN A CRYOPROTECTANT SOLUTION WHICH DID NOT CONTAIN NEU5AC
Authors
:
E. Rudino-Pinera, P. Tunnah, S. J. Crennell, R. G. Webster, W. G. Laver, E. F. Garman
Date
:
20 Oct 05 (Deposition) - 27 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Hydrolase, Influenza Type A, Neuraminidase, Sialic Acid, Subtype N9, Glycoprotein, Glycosidase, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Rudino-Pinera, S. J. Crennell, R. G. Webster, W. G. Laver, E. F. Garman
The Crystal Structure Of Influenza Type A Virus Neuraminidase Of The N6 Subtype At 1. 85 A Resolution
To Be Published
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Hetero Components
(4, 56)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: CALCIUM ION (CAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5a: O-SIALIC ACID (SIAa)
5b: O-SIALIC ACID (SIAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
20
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SIA
8
Ligand/Ion
O-SIALIC ACID
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:224 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:2057 , HOH A:2081 , HOH A:2223 , HOH A:2224 , HOH A:2225
BINDING SITE FOR RESIDUE SIA A1469
02
AC2
SOFTWARE
SER A:367 , SER A:370 , SER A:372 , ASN A:400 , THR A:401 , ASP A:402 , TRP A:403 , LYS A:432
BINDING SITE FOR RESIDUE SIA A1470
03
AC3
SOFTWARE
ASN A:199 , ASN A:200 , LEU A:453 , GLY A:454 , GLN A:455 , NAG A:1472 , HOH A:2211 , HOH A:2226 , HOH A:2227
BINDING SITE FOR RESIDUE NAG A1471
04
AC4
SOFTWARE
GLN A:392 , GLY A:394 , NAG A:1471 , BMA A:1476 , HOH A:2173 , HOH A:2226 , HOH A:2229
BINDING SITE FOR RESIDUE NAG A1472
05
AC5
SOFTWARE
ASP A:83 , PHE A:84 , ASN A:86 , ASN A:234 , NAG A:1474 , HOH A:2228
BINDING SITE FOR RESIDUE NAG A1473
06
AC6
SOFTWARE
ASP A:83 , NAG A:1473
BINDING SITE FOR RESIDUE NAG A1474
07
AC7
SOFTWARE
ASN A:146 , TRP A:437
BINDING SITE FOR RESIDUE NAG A1475
08
AC8
SOFTWARE
LEU A:377 , THR A:391 , GLN A:392 , GLY A:394 , NAG A:1472 , MAN A:1477 , BMA A:1480 , HOH A:2165 , HOH A:2170 , HOH A:2229
BINDING SITE FOR RESIDUE BMA A1476
09
AC9
SOFTWARE
ARG A:364 , GLU A:375 , BMA A:1476 , MAN A:1478 , BMA A:1479 , HOH A:2230
BINDING SITE FOR RESIDUE MAN A1477
10
BC1
SOFTWARE
ASP A:330 , ARG A:364 , LYS A:389 , PRO A:390 , MAN A:1477 , BMA A:1479 , HOH A:2232
BINDING SITE FOR RESIDUE MAN A1478
11
BC2
SOFTWARE
ARG A:327 , ASN A:329 , ASP A:330 , ARG A:364 , ILE A:366 , ILE A:368 , MAN A:1477 , MAN A:1478 , HOH A:2140 , HOH A:2233
BINDING SITE FOR RESIDUE BMA A1479
12
BC3
SOFTWARE
BMA A:1476 , BMA A:1481 , BMA A:1482
BINDING SITE FOR RESIDUE BMA A1480
13
BC4
SOFTWARE
BMA A:1480
BINDING SITE FOR RESIDUE BMA A1481
14
BC5
SOFTWARE
BMA A:1480 , HOH A:2229
BINDING SITE FOR RESIDUE BMA A1482
15
BC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , ASN A:347 , HOH A:2138 , HOH A:2145
BINDING SITE FOR RESIDUE CA A1483
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2c4la_ (A:)
View:
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Classes
(
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(
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Folds
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Superfamilies
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d2c4la_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2c4lA00 (A:82-468)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Avian influenza virus a (Influenza a virus)
(2)
1a
2c4lA00
A:82-468
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (81 KB)
Header - Asym.Unit
Biol.Unit 1 (278 KB)
Header - Biol.Unit 1
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