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2C4L
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (278 KB)
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(1)
Title
:
STRUCTURE OF NEURAMINIDASE SUBTYPE N9 COMPLEXED WITH 30 MM SIALIC ACID (NANA, NEU5AC), CRYSTAL SOAKED FOR 24 HOURS AT 291 K AND FINALLY BACKSOAKED FOR 30 MIN IN A CRYOPROTECTANT SOLUTION WHICH DID NOT CONTAIN NEU5AC
Authors
:
E. Rudino-Pinera, P. Tunnah, S. J. Crennell, R. G. Webster, W. G. Laver, E. F. Garman
Date
:
20 Oct 05 (Deposition) - 27 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Hydrolase, Influenza Type A, Neuraminidase, Sialic Acid, Subtype N9, Glycoprotein, Glycosidase, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Rudino-Pinera, S. J. Crennell, R. G. Webster, W. G. Laver, E. F. Garman
The Crystal Structure Of Influenza Type A Virus Neuraminidase Of The N6 Subtype At 1. 85 A Resolution
To Be Published
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: CALCIUM ION (CAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5a: O-SIALIC ACID (SIAa)
5b: O-SIALIC ACID (SIAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
5
Ligand/Ion
BETA-D-MANNOSE
2
CA
1
Ligand/Ion
CALCIUM ION
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SIA
2
Ligand/Ion
O-SIALIC ACID
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:224 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:2057 , HOH A:2081 , HOH A:2223 , HOH A:2224 , HOH A:2225
BINDING SITE FOR RESIDUE SIA A1469
02
AC2
SOFTWARE
SER A:367 , SER A:370 , SER A:372 , ASN A:400 , THR A:401 , ASP A:402 , TRP A:403 , LYS A:432
BINDING SITE FOR RESIDUE SIA A1470
03
AC3
SOFTWARE
ASN A:199 , ASN A:200 , LEU A:453 , GLY A:454 , GLN A:455 , NAG A:1472 , HOH A:2211 , HOH A:2226 , HOH A:2227
BINDING SITE FOR RESIDUE NAG A1471
04
AC4
SOFTWARE
GLN A:392 , GLY A:394 , NAG A:1471 , BMA A:1476 , HOH A:2173 , HOH A:2226 , HOH A:2229
BINDING SITE FOR RESIDUE NAG A1472
05
AC5
SOFTWARE
ASP A:83 , PHE A:84 , ASN A:86 , ASN A:234 , NAG A:1474 , HOH A:2228
BINDING SITE FOR RESIDUE NAG A1473
06
AC6
SOFTWARE
ASP A:83 , NAG A:1473
BINDING SITE FOR RESIDUE NAG A1474
07
AC7
SOFTWARE
ASN A:146 , TRP A:437
BINDING SITE FOR RESIDUE NAG A1475
08
AC8
SOFTWARE
LEU A:377 , THR A:391 , GLN A:392 , GLY A:394 , NAG A:1472 , MAN A:1477 , BMA A:1480 , HOH A:2165 , HOH A:2170 , HOH A:2229
BINDING SITE FOR RESIDUE BMA A1476
09
AC9
SOFTWARE
ARG A:364 , GLU A:375 , BMA A:1476 , MAN A:1478 , BMA A:1479 , HOH A:2230
BINDING SITE FOR RESIDUE MAN A1477
10
BC1
SOFTWARE
ASP A:330 , ARG A:364 , LYS A:389 , PRO A:390 , MAN A:1477 , BMA A:1479 , HOH A:2232
BINDING SITE FOR RESIDUE MAN A1478
11
BC2
SOFTWARE
ARG A:327 , ASN A:329 , ASP A:330 , ARG A:364 , ILE A:366 , ILE A:368 , MAN A:1477 , MAN A:1478 , HOH A:2140 , HOH A:2233
BINDING SITE FOR RESIDUE BMA A1479
12
BC3
SOFTWARE
BMA A:1476 , BMA A:1481 , BMA A:1482
BINDING SITE FOR RESIDUE BMA A1480
13
BC4
SOFTWARE
BMA A:1480
BINDING SITE FOR RESIDUE BMA A1481
14
BC5
SOFTWARE
BMA A:1480 , HOH A:2229
BINDING SITE FOR RESIDUE BMA A1482
15
BC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , ASN A:347 , HOH A:2138 , HOH A:2145
BINDING SITE FOR RESIDUE CA A1483
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2c4la_ (A:)
View:
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(
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Folds
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Superfamilies
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d2c4la_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2c4lA00 (A:82-468)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Avian influenza virus a (Influenza a virus)
(2)
1a
2c4lA00
A:82-468
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (81 KB)
Header - Asym.Unit
Biol.Unit 1 (278 KB)
Header - Biol.Unit 1
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