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2C41
Asym. Unit
Info
Asym.Unit (331 KB)
Biol.Unit 1 (325 KB)
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(1)
Title
:
X-RAY STRUCTURE OF DPS FROM THERMOSYNECHOCOCCUS ELONGATUS
Authors
:
A. Ilari, S. Franceschini, P. Ceci, E. Chiancone
Date
:
14 Oct 05 (Deposition) - 11 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.81
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Iron-Binding/Oxidation Protein, Dps (Dna-Binding Proteins From Starved Cells), Iron Binding, Thermostable Protein, Thermophilic Cyanobacterium, Dna- Binding Protein, Stress Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Franceschini, P. Ceci, F. Alaleona, E. Chiancone, A. Ilari
Antioxidant Dps Protein From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus.
Febs J. V. 273 4913 2006
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: TETRAETHYLENE GLYCOL (PG4a)
2b: TETRAETHYLENE GLYCOL (PG4b)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
3d: TRIETHYLENE GLYCOL (PGEd)
3e: TRIETHYLENE GLYCOL (PGEe)
3f: TRIETHYLENE GLYCOL (PGEf)
3g: TRIETHYLENE GLYCOL (PGEg)
3h: TRIETHYLENE GLYCOL (PGEh)
3i: TRIETHYLENE GLYCOL (PGEi)
3j: TRIETHYLENE GLYCOL (PGEj)
3k: TRIETHYLENE GLYCOL (PGEk)
3l: TRIETHYLENE GLYCOL (PGEl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PGE
12
Ligand/Ion
TRIETHYLENE GLYCOL
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:42 , ARG D:42 , ARG F:42
BINDING SITE FOR RESIDUE CL A1159
02
AC2
SOFTWARE
ARG B:42 , ARG I:42 , ARG L:42
BINDING SITE FOR RESIDUE CL B1163
03
AC3
SOFTWARE
ARG C:42 , ARG G:42 , ARG K:42
BINDING SITE FOR RESIDUE CL C1161
04
AC4
SOFTWARE
ARG E:42 , ARG H:42 , ARG J:42
BINDING SITE FOR RESIDUE CL J1159
05
AC5
SOFTWARE
THR B:121 , GLU B:122 , GLY B:124 , ILE B:126 , HOH B:2095 , HOH B:2120 , HOH B:2121 , GLU C:122 , PG4 C:1159 , GLU F:118
BINDING SITE FOR RESIDUE PG4 B1159
06
AC6
SOFTWARE
GLU B:107 , LYS B:147
BINDING SITE FOR RESIDUE PGE B1160
07
AC7
SOFTWARE
GLU B:61 , GLU B:64 , MET B:68 , ARG B:134 , HOH B:2048 , HOH B:2122
BINDING SITE FOR RESIDUE PGE B1161
08
AC8
SOFTWARE
LYS B:152 , GLY B:153 , VAL B:157 , SER B:158 , HOH B:2123 , HOH L:2116
BINDING SITE FOR RESIDUE PGE B1162
09
AC9
SOFTWARE
PG4 B:1159 , THR C:4 , LYS C:8 , LEU C:69 , GLY C:124 , HOH C:2122 , GLU D:118 , HIS F:114
BINDING SITE FOR RESIDUE PG4 C1159
10
BC1
SOFTWARE
GLU C:64 , MET C:68 , ARG C:134 , HOH C:2064 , HOH C:2151 , LYS F:141
BINDING SITE FOR RESIDUE PGE C1160
11
BC2
SOFTWARE
MET B:68 , ASP B:70 , ILE D:110 , THR D:111 , GLN D:140 , ARG D:143 , HOH D:2083 , HOH D:2116 , HOH D:2117 , GLU F:122
BINDING SITE FOR RESIDUE PGE D1159
12
BC3
SOFTWARE
THR E:111 , HIS E:114 , GLU E:118 , HOH E:2121 , GLY I:124 , ILE I:126 , HOH I:2089
BINDING SITE FOR RESIDUE PGE E1159
13
BC4
SOFTWARE
LYS A:141 , GLU E:61 , GLU E:64 , MET E:68 , ARG E:134 , HOH E:2046 , HOH E:2122
BINDING SITE FOR RESIDUE PGE E1160
14
BC5
SOFTWARE
LYS F:16 , GLN F:72 , ASP F:79
BINDING SITE FOR RESIDUE PGE F1159
15
BC6
SOFTWARE
GLU F:61 , GLU F:64 , MET F:68 , ARG F:134 , HOH F:2114 , HOH F:2115 , HOH F:2116 , GLN H:137
BINDING SITE FOR RESIDUE PGE F1160
16
BC7
SOFTWARE
MET H:68 , ARG H:134 , HOH H:2053 , HOH H:2138 , HOH H:2139
BINDING SITE FOR RESIDUE PGE H1159
17
BC8
SOFTWARE
MET F:68 , GLU H:107 , ILE H:110 , THR H:111 , GLN H:140 , ARG H:143 , HOH H:2140
BINDING SITE FOR RESIDUE PGE H1160
18
BC9
SOFTWARE
LYS G:141 , GLU L:61 , GLU L:64 , MET L:68 , HOH L:2040 , HOH L:2118
BINDING SITE FOR RESIDUE PGE L1159
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2c41a_ (A:)
1b: SCOP_d2c41b_ (B:)
1c: SCOP_d2c41k_ (K:)
1d: SCOP_d2c41l_ (L:)
1e: SCOP_d2c41c_ (C:)
1f: SCOP_d2c41d_ (D:)
1g: SCOP_d2c41e_ (E:)
1h: SCOP_d2c41f_ (F:)
1i: SCOP_d2c41g_ (G:)
1j: SCOP_d2c41h_ (H:)
1k: SCOP_d2c41i_ (I:)
1l: SCOP_d2c41j_ (J:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Thermosynechococcus elongatus [TaxId: 197221]
(1)
1a
d2c41a_
A:
1b
d2c41b_
B:
1c
d2c41k_
K:
1d
d2c41l_
L:
1e
d2c41c_
C:
1f
d2c41d_
D:
1g
d2c41e_
E:
1h
d2c41f_
F:
1i
d2c41g_
G:
1j
d2c41h_
H:
1k
d2c41i_
I:
1l
d2c41j_
J:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain C
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Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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