PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2C3W
Biol. Unit 4
Info
Asym.Unit (94 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (24 KB)
Biol.Unit 3 (23 KB)
Biol.Unit 4 (25 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF CBM25 FROM BACILLUS HALODURANS AMYLASE IN COMPLEX WITH MALTOTETRAOSE
Authors
:
A. B. Boraston, M. Healey, J. Klassen, E. Ficko-Blean, A. Lammerts Van Bueren, V. Law
Date
:
12 Oct 05 (Deposition) - 17 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.81
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Sugar-Binding Protein, Carbohydrate-Binding Module, Starch Binding, Carbohydrate Binding, Glycoside Hydrolase, Amylose, Amylopectin, Malto-Oligosaccharide, Carbohydrate- Binding Module
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. B. Boraston, M. Healey, J. Klassen, E. Ficko-Blean, A. Lammerts Van Bueren, V. Law
A Structural And Functional Analysis Of Alpha- Glucan Recognition By Family 25 And 26 Carbohydrate-Binding Modules Reveals A Conserved Mode Of Starch Recognition
J. Biol. Chem. V. 281 587 2006
[
close entry info
]
Hetero Components
(2, 13)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE (GLCa)
1aa: ALPHA-D-GLUCOSE (GLCaa)
1ab: ALPHA-D-GLUCOSE (GLCab)
1ac: ALPHA-D-GLUCOSE (GLCac)
1ad: ALPHA-D-GLUCOSE (GLCad)
1ae: ALPHA-D-GLUCOSE (GLCae)
1af: ALPHA-D-GLUCOSE (GLCaf)
1ag: ALPHA-D-GLUCOSE (GLCag)
1ah: ALPHA-D-GLUCOSE (GLCah)
1ai: ALPHA-D-GLUCOSE (GLCai)
1b: ALPHA-D-GLUCOSE (GLCb)
1c: ALPHA-D-GLUCOSE (GLCc)
1d: ALPHA-D-GLUCOSE (GLCd)
1e: ALPHA-D-GLUCOSE (GLCe)
1f: ALPHA-D-GLUCOSE (GLCf)
1g: ALPHA-D-GLUCOSE (GLCg)
1h: ALPHA-D-GLUCOSE (GLCh)
1i: ALPHA-D-GLUCOSE (GLCi)
1j: ALPHA-D-GLUCOSE (GLCj)
1k: ALPHA-D-GLUCOSE (GLCk)
1l: ALPHA-D-GLUCOSE (GLCl)
1m: ALPHA-D-GLUCOSE (GLCm)
1n: ALPHA-D-GLUCOSE (GLCn)
1o: ALPHA-D-GLUCOSE (GLCo)
1p: ALPHA-D-GLUCOSE (GLCp)
1q: ALPHA-D-GLUCOSE (GLCq)
1r: ALPHA-D-GLUCOSE (GLCr)
1s: ALPHA-D-GLUCOSE (GLCs)
1t: ALPHA-D-GLUCOSE (GLCt)
1u: ALPHA-D-GLUCOSE (GLCu)
1v: ALPHA-D-GLUCOSE (GLCv)
1w: ALPHA-D-GLUCOSE (GLCw)
1x: ALPHA-D-GLUCOSE (GLCx)
1y: ALPHA-D-GLUCOSE (GLCy)
1z: ALPHA-D-GLUCOSE (GLCz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLC
12
Ligand/Ion
ALPHA-D-GLUCOSE
2
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
20: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:75 , GLN A:78 , ASP A:93 , GLY A:94 , GLC A:1104 , HOH A:2182 , HOH A:2183 , HOH A:2184 , GLN D:78 , GLC D:1106 , GLC D:1107
BINDING SITE FOR RESIDUE GLC A1103
02
AC2
SOFTWARE
TYR A:16 , LYS A:17 , THR A:18 , TRP A:20 , ASP A:75 , GLC A:1103 , GLC A:1105 , HOH A:2136 , HOH A:2190 , GLN D:78 , GLC D:1106
BINDING SITE FOR RESIDUE GLC A1104
03
AC9
SOFTWARE
TRP A:34 , THR A:35 , THR A:36 , LEU A:37 , GLC A:1110 , HOH A:2064 , HOH A:2065 , HOH A:2212 , HOH A:2213 , HOH A:2214 , GLC D:1105
BINDING SITE FOR RESIDUE GLC A1109
04
BC1
SOFTWARE
LEU A:37 , GLC A:1109 , GLC A:1111 , HOH A:2216 , HOH A:2217 , PRO B:38 , GLY B:70 , GLC D:1104 , GLC D:1105
BINDING SITE FOR RESIDUE GLC A1110
05
BC2
SOFTWARE
GLC A:1110 , HOH A:2219 , HIS B:22 , HIS B:24 , GLC D:1103
BINDING SITE FOR RESIDUE GLC A1111
06
CC6
SOFTWARE
HIS B:22 , SO4 B:1110 , HOH B:2026 , ARG D:80 , GLC D:1103 , HOH D:2151 , HOH D:2152
BINDING SITE FOR RESIDUE GLC D1102
07
CC7
SOFTWARE
GLC A:1111 , HOH A:2129 , HIS B:22 , SER B:71 , SO4 B:1110 , HOH B:2186 , ARG D:80 , GLC D:1102 , GLC D:1104 , HOH D:2156
BINDING SITE FOR RESIDUE GLC D1103
08
CC8
SOFTWARE
LEU A:37 , TRP A:74 , ASN A:76 , GLC A:1110 , SER B:71 , GLC D:1103 , GLC D:1105 , HOH D:2117 , HOH D:2156
BINDING SITE FOR RESIDUE GLC D1104
09
CC9
SOFTWARE
HIS A:26 , ASP A:81 , GLC A:1109 , GLC A:1110 , HOH A:2220 , GLC D:1104 , HOH D:2158 , HOH D:2159 , HOH D:2161
BINDING SITE FOR RESIDUE GLC D1105
10
DC1
SOFTWARE
GLN A:78 , GLC A:1103 , GLC A:1104 , ASP D:75 , GLN D:78 , ASP D:93 , GLY D:94 , GLC D:1107 , HOH D:2116 , HOH D:2162 , HOH D:2163
BINDING SITE FOR RESIDUE GLC D1106
11
DC2
SOFTWARE
GLN A:78 , GLC A:1103 , HOH A:2158 , TYR D:16 , LYS D:17 , THR D:18 , TRP D:20 , ASP D:75 , GLC D:1106 , GLC D:1108 , HOH D:2164 , HOH D:2165
BINDING SITE FOR RESIDUE GLC D1107
12
DC3
SOFTWARE
THR D:18 , GLY D:19 , TRP D:20 , GLC D:1107 , GLC D:1109 , HOH D:2166 , HOH D:2167 , HOH D:2168
BINDING SITE FOR RESIDUE GLC D1108
13
DC4
SOFTWARE
GLC D:1108 , HOH D:2169
BINDING SITE FOR RESIDUE GLC D1109
14
DC5
SOFTWARE
ARG A:80 , GLC D:1111 , HOH D:2172 , HOH D:2173
BINDING SITE FOR RESIDUE GLC D1110
15
DC6
SOFTWARE
GLN A:78 , HOH A:2139 , TRP D:74 , ASN D:76 , GLC D:1110 , GLC D:1112 , HOH D:2172 , HOH D:2175
BINDING SITE FOR RESIDUE GLC D1111
16
DC7
SOFTWARE
HIS D:26 , TRP D:34 , ASP D:81 , GLC D:1111 , GLC D:1113 , HOH D:2176 , HOH D:2177 , HOH D:2178 , HOH D:2179
BINDING SITE FOR RESIDUE GLC D1112
17
DC8
SOFTWARE
GLC D:1112 , SO4 D:1114 , HOH D:2181
BINDING SITE FOR RESIDUE GLC D1113
18
DC9
SOFTWARE
TRP A:34 , ARG A:64 , HOH A:2220 , HOH A:2221 , HOH D:2161
BINDING SITE FOR RESIDUE SO4 A1112
19
EC1
SOFTWARE
TRP B:20 , THR B:21 , ASN B:69 , HOH B:2183 , HOH B:2184 , HOH B:2185 , HOH B:2186 , GLC D:1102 , GLC D:1103
BINDING SITE FOR RESIDUE SO4 B1110
20
EC3
SOFTWARE
TRP D:34 , ARG D:64 , GLC D:1113 , HOH D:2181 , HOH D:2182
BINDING SITE FOR RESIDUE SO4 D1114
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (94 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Biol.Unit 2 (24 KB)
Header - Biol.Unit 2
Biol.Unit 3 (23 KB)
Header - Biol.Unit 3
Biol.Unit 4 (25 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2C3W
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
