PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2C3Q
Biol. Unit 1
Info
Asym.Unit (170 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (84 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HUMAN GLUTATHIONE-S-TRANSFERASE T1-1 W234R MUTANT, COMPLEX WITH S-HEXYLGLUTATHIONE
Authors
:
K. Tars, A. -K. Larsson, A. Shokeer, B. Olin, B. Mannervik, G. J. Kleywegt
Date
:
11 Oct 05 (Deposition) - 30 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Glutathione, Glutathione Transferase, T1-1, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tars, A. -K. Larsson, A. Shokeer, B. Olin, B. Mannervik, G. J. Kleywegt
Structural Basis Of The Suppressed Catalytic Activity Of Wild-Type Human Glutathione Transferase T1-1 Compared To Its W234R Mutant.
J. Mol. Biol. V. 355 96 2006
[
close entry info
]
Hetero Components
(2, 18)
Info
All Hetero Components
1a: S-HEXYLGLUTATHIONE (GTXa)
1b: S-HEXYLGLUTATHIONE (GTXb)
1c: S-HEXYLGLUTATHIONE (GTXc)
1d: S-HEXYLGLUTATHIONE (GTXd)
2a: IODIDE ION (IODa)
2aa: IODIDE ION (IODaa)
2ab: IODIDE ION (IODab)
2ac: IODIDE ION (IODac)
2ad: IODIDE ION (IODad)
2ae: IODIDE ION (IODae)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
2z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTX
2
Ligand/Ion
S-HEXYLGLUTATHIONE
2
IOD
16
Ligand/Ion
IODIDE ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:115 , HIS A:176
BINDING SITE FOR RESIDUE IOD A 402
02
AC2
SOFTWARE
TRP A:101 , LYS B:53
BINDING SITE FOR RESIDUE IOD A 408
03
AC3
SOFTWARE
GLN B:12
BINDING SITE FOR RESIDUE IOD B 401
04
AC4
SOFTWARE
TRP B:115 , HIS B:176 , GTX B:301
BINDING SITE FOR RESIDUE IOD B 402
05
AC5
SOFTWARE
HIS A:103 , HIS B:103
BINDING SITE FOR RESIDUE IOD B 404
06
AC6
SOFTWARE
GLN B:183
BINDING SITE FOR RESIDUE IOD B 405
07
AC7
SOFTWARE
ALA B:156 , PRO B:161
BINDING SITE FOR RESIDUE IOD B 406
08
AC8
SOFTWARE
HOH A:2023 , TRP B:101
BINDING SITE FOR RESIDUE IOD B 407
09
CC1
SOFTWARE
SER A:11 , LEU A:35 , HIS A:40 , LYS A:53 , VAL A:54 , PRO A:55 , GLU A:66 , SER A:67 , TRP A:115 , ARG A:234 , MET A:238 , HOH A:2026 , HOH A:2054 , HOH A:2109 , HOH A:2110 , HOH B:2048
BINDING SITE FOR RESIDUE GTX A 301
10
CC2
SOFTWARE
LEU B:35 , HIS B:40 , LYS B:53 , VAL B:54 , PRO B:55 , GLU B:66 , SER B:67 , ARG B:234 , MET B:238 , IOD B:402 , HOH B:2025 , HOH B:2092 , HOH B:2095 , HOH B:2096 , HOH B:2097
BINDING SITE FOR RESIDUE GTX B 301
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014501 (A21T, chain A/B, )
2: VAR_014502 (D141N, chain A/B, )
3: VAR_014503 (V169I, chain A/B, )
4: VAR_014504 (E173K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014501
A
21
T
GSTT1_HUMAN
Polymorphism
2266635
A/B
A
21
T
2
UniProt
VAR_014502
D
141
N
GSTT1_HUMAN
Polymorphism
2266633
A/B
D
141
N
3
UniProt
VAR_014503
V
169
I
GSTT1_HUMAN
Polymorphism
2266637
A/B
V
169
I
4
UniProt
VAR_014504
E
173
K
GSTT1_HUMAN
Polymorphism
2234953
A/B
E
173
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:88-220,B:88-220)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTT1_HUMAN
88-220
2
A:88-220
B:88-220
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2c3qa2 (A:80-240)
1b: SCOP_d2c3qb2 (B:80-240)
1c: SCOP_d2c3qc2 (C:80-240)
1d: SCOP_d2c3qd2 (D:80-240)
2a: SCOP_d2c3qa1 (A:2-79)
2b: SCOP_d2c3qb1 (B:2-79)
2c: SCOP_d2c3qc1 (C:2-79)
2d: SCOP_d2c3qd1 (D:2-79)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2c3qa2
A:80-240
1b
d2c3qb2
B:80-240
1c
d2c3qc2
C:80-240
1d
d2c3qd2
D:80-240
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
2a
d2c3qa1
A:2-79
2b
d2c3qb1
B:2-79
2c
d2c3qc1
C:2-79
2d
d2c3qd1
D:2-79
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2c3qA01 (A:2-80)
1b: CATH_2c3qB01 (B:2-80)
1c: CATH_2c3qC01 (C:2-80)
1d: CATH_2c3qD01 (D:2-80)
2a: CATH_2c3qA02 (A:81-240)
2b: CATH_2c3qB02 (B:81-240)
2c: CATH_2c3qC02 (C:81-240)
2d: CATH_2c3qD02 (D:81-240)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2c3qA01
A:2-80
1b
2c3qB01
B:2-80
1c
2c3qC01
C:2-80
1d
2c3qD01
D:2-80
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
2c3qA02
A:81-240
2b
2c3qB02
B:81-240
2c
2c3qC02
C:81-240
2d
2c3qD02
D:81-240
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (170 KB)
Header - Asym.Unit
Biol.Unit 1 (84 KB)
Header - Biol.Unit 1
Biol.Unit 2 (84 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2C3Q
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
