PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2C2W
Biol. Unit 1
Info
Asym.Unit (153 KB)
Biol.Unit 1 (289 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE FLUORINASE FROM STREPTOMYCES CATTLEYA IS ALSO A CHLORINASE. STRUCTURE OF 5'-CHLORO-5'-DEOXYADENOSINE CRYSTALLISED IN THE FLUORINASE.
Authors
:
A. R. Mcewan, J. H. Naismith, D. O'Hagan
Date
:
30 Sep 05 (Deposition) - 19 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Fluorinase, 5'-Chloro-5'-Deoxyadenosine, Fla, Bacterial Fluorinating Enzyme, Bacterial Chlorinating Enzyme, Streptomyces Cattleya, Transferase, Chlorinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Deng, S. L. Cobb, A. R. Mcewan, R. P. Mcglinchey, J. H. Naismith, D. O'Hagan, D. A. Robinson, J. B. Spencer
The Fluorinase From Streptomyces Cattleya Is Also A Chlorinase.
Angew. Chem. Int. Ed. Engl. V. 45 759 2006
[
close entry info
]
Hetero Components
(1, 6)
Info
All Hetero Components
1a: 5'-CHLORO-5'-DEOXYADENOSINE (5CDa)
1b: 5'-CHLORO-5'-DEOXYADENOSINE (5CDb)
1c: 5'-CHLORO-5'-DEOXYADENOSINE (5CDc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5CD
6
Ligand/Ion
5'-CHLORO-5'-DEOXYADENOSINE
2
CL
-1
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:287
BINDING SITE FOR RESIDUE CL A1299
02
AC2
SOFTWARE
ASN A:268 , SER A:269 , HOH A:2156 , THR C:155
BINDING SITE FOR RESIDUE CL A1300
03
AC3
SOFTWARE
PHE A:110 , ARG A:112
BINDING SITE FOR RESIDUE CL A1301
04
AC4
SOFTWARE
ASP B:210 , ASN B:215 , TRP B:217 , TYR B:266 , HOH B:2144 , HOH B:2177
BINDING SITE FOR RESIDUE CL B1299
05
AC5
SOFTWARE
HIS B:287
BINDING SITE FOR RESIDUE CL B1300
06
AC6
SOFTWARE
THR C:82 , TYR C:157
BINDING SITE FOR RESIDUE CL C1299
07
AC7
SOFTWARE
GLU C:133
BINDING SITE FOR RESIDUE CL C1300
08
AC8
SOFTWARE
ASP A:16 , LEU A:17 , TRP A:50 , TYR A:77 , PRO A:78 , THR A:80 , THR A:155 , PHE A:156 , SER A:158 , PHE B:213 , ASN B:215 , PHE B:254 , ARG B:277 , ALA B:279
BINDING SITE FOR RESIDUE 5CD A 500
09
AC9
SOFTWARE
ASP B:16 , LEU B:17 , TRP B:50 , TYR B:77 , PRO B:78 , THR B:80 , THR B:155 , PHE B:156 , SER B:158 , PHE C:213 , ASN C:215 , PHE C:254 , ARG C:277 , ALA C:279
BINDING SITE FOR RESIDUE 5CD B 500
10
BC1
SOFTWARE
PHE A:213 , ASN A:215 , PHE A:254 , ARG A:277 , ALA A:279 , ASP C:16 , LEU C:17 , TRP C:50 , THR C:76 , TYR C:77 , PRO C:78 , THR C:80 , THR C:155 , PHE C:156 , SER C:158
BINDING SITE FOR RESIDUE 5CD C 500
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2c2wa1 (A:193-298)
1b: SCOP_d2c2wb1 (B:193-298)
1c: SCOP_d2c2wc1 (C:193-298)
2a: SCOP_d2c2wa2 (A:8-192)
2b: SCOP_d2c2wb2 (B:8-192)
2c: SCOP_d2c2wc2 (C:8-192)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Bacterial fluorinating enzyme, C-terminal domain
(16)
Superfamily
:
Bacterial fluorinating enzyme, C-terminal domain
(16)
Family
:
Bacterial fluorinating enzyme, C-terminal domain
(10)
Protein domain
:
5'-fluoro-5'-deoxyadenosine synthase
(10)
Streptomyces cattleya [TaxId: 29303]
(10)
1a
d2c2wa1
A:193-298
1b
d2c2wb1
B:193-298
1c
d2c2wc1
C:193-298
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Bacterial fluorinating enzyme, N-terminal domain
(16)
Superfamily
:
Bacterial fluorinating enzyme, N-terminal domain
(16)
Family
:
Bacterial fluorinating enzyme, N-terminal domain
(14)
Protein domain
:
5'-fluoro-5'-deoxyadenosine synthase
(10)
Streptomyces cattleya [TaxId: 29303]
(10)
2a
d2c2wa2
A:8-192
2b
d2c2wb2
B:8-192
2c
d2c2wc2
C:8-192
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (289 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2C2W
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help