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2C2L
Asym. Unit
Info
Asym.Unit (200 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CHIP U-BOX E3 UBIQUITIN LIGASE
Authors
:
M. Zhang, S. M. Roe, L. H. Pearl
Date
:
29 Sep 05 (Deposition) - 23 Nov 05 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Chaperone, E3 Ligase, Ubiquitinylation, Tpr, Heat-Shock Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zhang, M. Windheim, S. M. Roe, M. Peggie, P. Cohen, C. Prodromou, L. H. Pearl
Chaperoned Ubiquitylation-Crystal Structures Of The Chip U Box E3 Ubiquitin Ligase And A Chip- Ubc13-Uev1A Complex
Mol. Cell V. 20 525 2005
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
1b: NICKEL (II) ION (NIb)
1c: NICKEL (II) ION (NIc)
1d: NICKEL (II) ION (NId)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
View:
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No.
Name
Count
Type
Full Name
1
NI
4
Ligand/Ion
NICKEL (II) ION
2
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:26 , ALA A:27 , ARG A:56 , ASN A:57 , SER D:26 , ALA D:27 , ARG D:56 , ASN D:57
BINDING SITE FOR RESIDUE SO4 A1305
2
AC2
SOFTWARE
ARG A:85 , GLN A:105 , ASN A:117
BINDING SITE FOR RESIDUE SO4 A1306
3
AC3
SOFTWARE
GLN A:33 , ARG A:36 , LEU C:285 , LYS D:235
BINDING SITE FOR RESIDUE SO4 A1307
4
AC4
SOFTWARE
SER B:26 , ALA B:27 , ARG B:56 , ASN B:57 , ALA C:27 , ARG C:56 , ASN C:57
BINDING SITE FOR RESIDUE SO4 B1305
5
AC5
SOFTWARE
ARG B:85 , GLN B:105 , GLU B:113 , ARG B:120
BINDING SITE FOR RESIDUE SO4 B1306
6
AC6
SOFTWARE
ARG C:85 , GLN C:105 , ASN C:117
BINDING SITE FOR RESIDUE SO4 C1305
7
AC7
SOFTWARE
ARG D:85 , GLN D:105 , GLU D:113 , ASN D:117
BINDING SITE FOR RESIDUE SO4 D1305
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 20)
Info
All PROSITE Patterns/Profiles
1: TPR (A:27-60,B:27-60,C:27-60,D:27-60|A:...)
2: TPR_REGION (A:27-128,B:27-128,C:27-128,D:27-12...)
3: U_BOX (A:227-301,B:227-301,C:227-301,D:22...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
CHIP_MOUSE
27-60
61-94
95-128
12
A:27-60
B:27-60
C:27-60
D:27-60
A:61-94
B:61-94
C:61-94
D:61-94
A:95-128
B:95-128
C:95-128
D:95-128
2
TPR_REGION
PS50293
TPR repeat region circular profile.
CHIP_MOUSE
27-128
4
A:27-128
B:27-128
C:27-128
D:27-128
3
U_BOX
PS51698
U-box domain profile.
CHIP_MOUSE
227-301
4
A:227-301
B:227-301
C:227-301
D:227-301
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2c2la1 (A:24-224)
1b: SCOP_d2c2lb1 (B:24-224)
1c: SCOP_d2c2lc1 (C:24-224)
1d: SCOP_d2c2ld1 (D:24-224)
2a: SCOP_d2c2la2 (A:225-304)
2b: SCOP_d2c2lb2 (B:225-304)
2c: SCOP_d2c2lc2 (C:225-304)
2d: SCOP_d2c2ld2 (D:225-304)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
Tetratricopeptide repeat (TPR)
(47)
Protein domain
:
STIP1 homology and U box-containing protein 1, STUB1
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d2c2la1
A:24-224
1b
d2c2lb1
B:24-224
1c
d2c2lc1
C:24-224
1d
d2c2ld1
D:24-224
Class
:
Small proteins
(3458)
Fold
:
RING/U-box
(48)
Superfamily
:
RING/U-box
(48)
Family
:
U-box
(8)
Protein domain
:
STIP1 homology and U box-containing protein 1, STUB1
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
2a
d2c2la2
A:225-304
2b
d2c2lb2
B:225-304
2c
d2c2lc2
C:225-304
2d
d2c2ld2
D:225-304
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CATH Domains
(0, 0)
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Pfam Domains
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Chain H
Asymmetric Unit 1
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Asym.Unit (200 KB)
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