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2C2H
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN RAC3 IN COMPLEX WITH GDP
Authors
:
J. E. Debreczeni, X. Yang, Y. Zao, J. Elkins, C. Gileadi, N. Burgess, S. C O. Gileadi, O. Fedorov, G. Bunkoczi, F. Von Delft, D. Doyle, M. Sundst C. Arrowsmith, J. Weigelt, A. Edwards
Date
:
29 Sep 05 (Deposition) - 13 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gtpase Rac3, Small Gtp Binding Protein, P21 Rac, Ras- Related C3 Butulinum Toxin Substrate 3, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Debreczeni, X. Yang, Y. Zao, J. Elkins, C. Gileadi, N. Burgess, S. Colebrook, O. Gileadi, O. Fedorov, G. Bunkoczi, F. Von Delft, D. Doyle, M. Sundstrom, C. Arrowsmith, J. Weigelt, A. Edwards
Crystal Structure Of The Human Rac3 In Complex With Gdp
To Be Published
[
close entry info
]
Hetero Components
(4, 30)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
2d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
2e: GUANOSINE-5'-DIPHOSPHATE (GDPe)
2f: GUANOSINE-5'-DIPHOSPHATE (GDPf)
2g: GUANOSINE-5'-DIPHOSPHATE (GDPg)
2h: GUANOSINE-5'-DIPHOSPHATE (GDPh)
2i: GUANOSINE-5'-DIPHOSPHATE (GDPi)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
12
Ligand/Ion
CALCIUM ION
2
GDP
9
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
5
Ligand/Ion
MAGNESIUM ION
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:104 , GDP A:1179 , GDP A:1180 , HOH A:2050
BINDING SITE FOR RESIDUE CA A1183
02
AC2
SOFTWARE
HIS A:103 , GDP A:1179 , GDP A:1180
BINDING SITE FOR RESIDUE CA A1184
03
AC3
SOFTWARE
GDP A:1180 , GDP A:1181 , SO4 A:1189 , HOH A:2099
BINDING SITE FOR RESIDUE CA A1185
04
AC4
SOFTWARE
HIS A:107 , GDP A:1181 , SO4 A:1188 , SO4 A:1189
BINDING SITE FOR RESIDUE CA A1186
05
AC5
SOFTWARE
GDP A:1181
BINDING SITE FOR RESIDUE CA A1187
06
AC6
SOFTWARE
PRO A:106 , HIS A:107 , GDP A:1180 , GDP A:1181 , CA A:1186 , SO4 A:1189 , CA A:1193 , HOH A:2048 , HOH A:2099 , HOH A:2102 , HOH A:2103
BINDING SITE FOR RESIDUE SO4 A1188
07
AC7
SOFTWARE
HIS A:107 , GDP A:1181 , CA A:1185 , CA A:1186 , SO4 A:1188 , CA A:1193 , HOH A:2099 , HOH A:2104 , HOH A:2105
BINDING SITE FOR RESIDUE SO4 A1189
08
AC8
SOFTWARE
THR A:17 , GDP A:1178 , HOH A:2008 , HOH A:2019 , HOH A:2081 , HOH A:2082
BINDING SITE FOR RESIDUE MG A1190
09
AC9
SOFTWARE
GDP A:1179 , GDP A:1180 , HOH A:2086 , HOH A:2089
BINDING SITE FOR RESIDUE MG A1191
10
BC1
SOFTWARE
GDP A:1180 , HOH A:2001 , HOH A:2085 , HOH A:2087 , HOH A:2094 , HOH A:2102
BINDING SITE FOR RESIDUE MG A1192
11
BC2
SOFTWARE
SO4 A:1188 , SO4 A:1189 , HOH A:2103
BINDING SITE FOR RESIDUE CA A1193
12
BC3
SOFTWARE
HIS B:107 , GDP B:1181 , SO4 B:1187 , SO4 B:1188
BINDING SITE FOR RESIDUE CA B1182
13
BC4
SOFTWARE
GDP B:1181 , SO4 B:1187
BINDING SITE FOR RESIDUE CA B1183
14
BC5
SOFTWARE
HIS B:104 , GDP B:1179 , GDP B:1180 , HOH B:2049
BINDING SITE FOR RESIDUE CA B1184
15
BC6
SOFTWARE
HIS B:103 , GDP B:1179 , GDP B:1180
BINDING SITE FOR RESIDUE CA B1185
16
BC7
SOFTWARE
GDP B:1181
BINDING SITE FOR RESIDUE CA B1186
17
BC8
SOFTWARE
HIS B:107 , GDP B:1181 , CA B:1182 , CA B:1183 , SO4 B:1188 , CA B:1191 , HOH B:2059 , HOH B:2060
BINDING SITE FOR RESIDUE SO4 B1187
18
BC9
SOFTWARE
PRO B:106 , HIS B:107 , GDP B:1180 , GDP B:1181 , CA B:1182 , SO4 B:1187 , CA B:1191 , HOH B:2061
BINDING SITE FOR RESIDUE SO4 B1188
19
CC1
SOFTWARE
THR B:17 , GDP B:1178 , HOH B:2005 , HOH B:2013 , HOH B:2044 , HOH B:2045
BINDING SITE FOR RESIDUE MG B1189
20
CC2
SOFTWARE
GDP B:1179 , GDP B:1180 , HOH B:2046 , HOH B:2048
BINDING SITE FOR RESIDUE MG B1190
21
CC3
SOFTWARE
SO4 B:1187 , SO4 B:1188 , HOH B:2061
BINDING SITE FOR RESIDUE CA B1191
22
CC4
SOFTWARE
ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , LYS A:116 , ASP A:118 , LEU A:119 , ARG A:147 , SER A:158 , ALA A:159 , LEU A:160 , MG A:1190 , HOH A:2007 , HOH A:2080 , HOH A:2081 , HOH A:2082 , HOH A:2083 , HOH A:2084
BINDING SITE FOR RESIDUE GDP A1178
23
CC5
SOFTWARE
PRO A:99 , GLU A:100 , HIS A:103 , HIS A:104 , GDP A:1180 , GDP A:1181 , CA A:1183 , CA A:1184 , MG A:1191 , HOH A:2085 , HOH A:2086 , HOH A:2087 , HOH A:2089
BINDING SITE FOR RESIDUE GDP A1179
24
CC6
SOFTWARE
HIS A:103 , HIS A:104 , PRO A:106 , GDP A:1179 , GDP A:1181 , CA A:1183 , CA A:1184 , CA A:1185 , SO4 A:1188 , MG A:1191 , MG A:1192 , HOH A:2085 , HOH A:2086 , HOH A:2087 , HOH A:2088 , HOH A:2089 , HOH A:2090 , HOH A:2091 , HOH A:2092
BINDING SITE FOR RESIDUE GDP A1180
25
CC7
SOFTWARE
HIS A:107 , GDP A:1179 , GDP A:1180 , CA A:1185 , CA A:1186 , CA A:1187 , SO4 A:1188 , SO4 A:1189 , HOH A:2052 , HOH A:2085 , HOH A:2095 , HOH A:2096 , HOH A:2098 , HOH A:2099 , HOH A:2105
BINDING SITE FOR RESIDUE GDP A1181
26
CC8
SOFTWARE
ALA A:27 , PHE A:28 , GLY A:30 , LEU A:117 , ARG A:120 , TYR A:139 , GLU A:156 , ARG A:163 , HOH A:2071 , HOH A:2100 , HOH A:2101 , ASP B:170
BINDING SITE FOR RESIDUE GDP A1182
27
CC9
SOFTWARE
ALA B:13 , VAL B:14 , GLY B:15 , LYS B:16 , THR B:17 , CYS B:18 , PHE B:28 , LYS B:116 , ASP B:118 , LEU B:119 , SER B:158 , ALA B:159 , LEU B:160 , MG B:1189 , HOH B:2003 , HOH B:2013 , HOH B:2044 , HOH B:2045
BINDING SITE FOR RESIDUE GDP B1178
28
DC1
SOFTWARE
PRO B:99 , GLU B:100 , HIS B:103 , HIS B:104 , GDP B:1180 , GDP B:1181 , CA B:1184 , CA B:1185 , MG B:1190 , HOH B:2046 , HOH B:2047 , HOH B:2048
BINDING SITE FOR RESIDUE GDP B1179
29
DC2
SOFTWARE
HIS B:103 , HIS B:104 , PRO B:106 , GDP B:1179 , GDP B:1181 , CA B:1184 , CA B:1185 , SO4 B:1188 , MG B:1190 , HOH B:2046 , HOH B:2048 , HOH B:2049 , HOH B:2050 , HOH B:2051 , HOH B:2052 , HOH B:2054 , HOH B:2055
BINDING SITE FOR RESIDUE GDP B1180
30
DC3
SOFTWARE
HIS B:107 , GDP B:1179 , GDP B:1180 , CA B:1182 , CA B:1183 , CA B:1186 , SO4 B:1187 , SO4 B:1188 , HOH B:2029 , HOH B:2051 , HOH B:2055 , HOH B:2056 , HOH B:2057 , HOH B:2058 , HOH B:2059
BINDING SITE FOR RESIDUE GDP B1181
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RHO (B:1-176)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC3_HUMAN
1-176
1
B:1-176
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.1 (A:3-12 | B:1-12)
Exon 1.2 (A:12-30 | B:12-33)
Exon 1.3 (A:38-75 | B:38-75)
Exon 1.4 (A:76-96 | B:76-96)
Exon 1.5 (A:97-150 | B:97-150)
Exon 1.6 (A:150-177 | B:150-177)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000306897
1
ENSE00001289808
chr17:
79989532-79989672
141
RAC3_HUMAN
1-12
12
2
A:3-12
B:1-12
10
12
1.2
ENST00000306897
2
ENSE00001328203
chr17:
79990263-79990334
72
RAC3_HUMAN
12-36
25
2
A:12-30
B:12-33
19
22
1.3
ENST00000306897
3
ENSE00001164123
chr17:
79990587-79990704
118
RAC3_HUMAN
36-75
40
2
A:38-75
B:38-75
38
38
1.4
ENST00000306897
4
ENSE00001164119
chr17:
79990823-79990885
63
RAC3_HUMAN
76-96
21
2
A:76-96
B:76-96
21
21
1.5
ENST00000306897
5
ENSE00001779448
chr17:
79991316-79991475
160
RAC3_HUMAN
97-150
54
2
A:97-150
B:97-150
54
54
1.6
ENST00000306897
6
ENSE00001314642
chr17:
79991575-79992077
503
RAC3_HUMAN
150-192
43
2
A:150-177
B:150-177
28
28
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2c2hb_ (B:)
2a: SCOP_d2c2ha1 (A:3-177)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d2c2hb_
B:
Protein domain
:
Rac3
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2c2ha1
A:3-177
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2c2hB00 (B:1-177)
1b: CATH_2c2hA00 (A:3-177)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2c2hB00
B:1-177
1b
2c2hA00
A:3-177
[
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Pfam Domains
(0, 0)
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all PFAM domains
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