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2C1Z
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
STRUCTURE AND ACTIVITY OF A FLAVONOID 3-O GLUCOSYLTRANSFERASE REVEALS THE BASIS FOR PLANT NATURAL PRODUCT MODIFICATION
Authors
:
W. Offen, C. Martinez-Fleites, E. Kiat-Lim, M. Yang, B. G. Davis, C. A. Tarling, C. M. Ford, D. J. Bowles, G. J. Davies
Date
:
22 Sep 05 (Deposition) - 09 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycosyltransferase, Flavonoid, Wine, Catalysis, Glycosylation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Offen, C. Martinez-Fleites, M. Yang, E. Kiat-Lim, B. G. Davis, C. A. Tarling, C. M. Ford, D. J. Bowles, G. J. Davies
Structure Of A Flavonoid Glucosyltransferase Reveals The Basis For Plant Natural Product Modification.
Embo J. V. 25 1396 2006
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENY... (KMPa)
2a: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-F... (U2Fa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
KMP
1
Ligand/Ion
3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE
2
U2F
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:18 , HIS A:20 , GLN A:84 , ILE A:87 , PHE A:121 , SER A:146 , HIS A:150 , GLN A:188 , PHE A:200 , PHE A:372 , HOH A:2304
BINDING SITE FOR RESIDUE KMP A1456
2
AC2
SOFTWARE
SER A:18 , THR A:19 , HIS A:20 , THR A:141 , TYR A:275 , SER A:277 , THR A:280 , SER A:306 , TRP A:332 , ALA A:333 , GLN A:335 , HIS A:350 , GLY A:352 , TRP A:353 , ASN A:354 , SER A:355 , GLU A:358 , PHE A:372 , ASP A:374 , GLN A:375 , HOH A:2200 , HOH A:2305 , HOH A:2306
BINDING SITE FOR RESIDUE U2F A1457
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SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_UFOG_VITVI_001 (Q47Z, chain A, )
02: VAR_UFOG_VITVI_002 (I69V, chain A, )
03: VAR_UFOG_VITVI_003 (P74A, chain A, )
04: VAR_UFOG_VITVI_004 (T91M, chain A, )
05: VAR_UFOG_VITVI_005 (V134V, chain A, )
06: VAR_UFOG_VITVI_006 (I153T, chain A, )
07: VAR_UFOG_VITVI_007 (G161A, chain A, )
08: VAR_UFOG_VITVI_009 (V289L, chain A, )
09: VAR_UFOG_VITVI_010 (S293A, chain A, )
10: VAR_UFOG_VITVI_011 (R312S, chain A, )
11: VAR_UFOG_VITVI_012 (Y326H, chain A, )
12: VAR_UFOG_VITVI_013 (F372Y, chain A, )
13: VAR_UFOG_VITVI_014 (V385A, chain A, )
14: VAR_UFOG_VITVI_015 (K399E, chain A, )
15: VAR_UFOG_VITVI_016 (R423G, chain A, )
16: VAR_UFOG_VITVI_017 (I444K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_UFOG_VITVI_001
*
Q
47
Z
UFOG_VITVI
---
---
A
Q
47
Z
02
UniProt
VAR_UFOG_VITVI_002
*
I
69
V
UFOG_VITVI
---
---
A
I
69
V
03
UniProt
VAR_UFOG_VITVI_003
*
P
74
A
UFOG_VITVI
---
---
A
P
74
A
04
UniProt
VAR_UFOG_VITVI_004
*
T
91
M
UFOG_VITVI
---
---
A
T
91
M
05
UniProt
VAR_UFOG_VITVI_005
*
L
134
V
UFOG_VITVI
---
---
A
V
134
V
06
UniProt
VAR_UFOG_VITVI_006
*
I
153
T
UFOG_VITVI
---
---
A
I
153
T
07
UniProt
VAR_UFOG_VITVI_007
*
G
161
A
UFOG_VITVI
---
---
A
G
161
A
08
UniProt
VAR_UFOG_VITVI_009
*
V
289
L
UFOG_VITVI
---
---
A
V
289
L
09
UniProt
VAR_UFOG_VITVI_010
*
S
293
A
UFOG_VITVI
---
---
A
S
293
A
10
UniProt
VAR_UFOG_VITVI_011
*
R
312
S
UFOG_VITVI
---
---
A
R
312
S
11
UniProt
VAR_UFOG_VITVI_012
*
Y
326
H
UFOG_VITVI
---
---
A
Y
326
H
12
UniProt
VAR_UFOG_VITVI_013
*
F
372
Y
UFOG_VITVI
---
---
A
F
372
Y
13
UniProt
VAR_UFOG_VITVI_014
*
V
385
A
UFOG_VITVI
---
---
A
V
385
A
14
UniProt
VAR_UFOG_VITVI_015
*
K
399
E
UFOG_VITVI
---
---
A
K
399
E
15
UniProt
VAR_UFOG_VITVI_016
*
R
423
G
UFOG_VITVI
---
---
A
R
423
G
16
UniProt
VAR_UFOG_VITVI_017
*
I
444
K
UFOG_VITVI
---
---
A
I
444
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UDPGT (A:332-375)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UDPGT
PS00375
UDP-glycosyltransferases signature.
UFOG_VITVI
332-375
1
A:332-375
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2c1za_ (A:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
UDPGT-like
(10)
Protein domain
:
automated matches
(3)
Grape (Vitis vinifera) [TaxId: 29760]
(2)
1a
d2c1za_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (82 KB)
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