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2C18
Biol. Unit 1
Info
Asym.Unit (133 KB)
Biol.Unit 1 (493 KB)
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(1)
Title
:
5-(4-CARBOXY-2-OXO-BUTANE-1-SULFONYL)-4-OXO-PENTANOIC ACID BOUND TO PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
F. Frere, M. Nentwich, S. Gacond, D. W. Heinz, R. Neier, N. Frankenberg-Dinkel
Date
:
11 Sep 05 (Deposition) - 20 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Enzyme Mechanism, Metalloenzyme, Porphobilinogen Synthase, Cocrystallization, Lyase, Porphyrin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
F. Frere, M. Nentwich, S. Gacond, D. W. Heinz, R. Neier, N. Frankenberg-Dinkel
Probing The Active Site Of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors.
Biochemistry V. 45 8243 2006
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: (Z)-N~6~-(3-CARBOXY-1-{[(4-CARBOXY... (LSOa)
2b: (Z)-N~6~-(3-CARBOXY-1-{[(4-CARBOXY... (LSOb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: TRIETHYLENE GLYCOL (PGEa)
5b: TRIETHYLENE GLYCOL (PGEb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
LSO
8
Mod. Amino Acid
(Z)-N~6~-(3-CARBOXY-1-{[(4-CARBOXY-2-OXOBUTYL)SULFONYL]METHYL}PROPYLIDENE)-L-LYSINE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
PGE
8
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:2062 , HOH B:2172 , HOH B:2316
BINDING SITE FOR RESIDUE MG A 347
02
AC2
SOFTWARE
HOH A:2234 , HOH A:2238 , HOH A:2242 , HOH B:2305
BINDING SITE FOR RESIDUE MG A 348
03
AC3
SOFTWARE
HOH A:2303 , HOH A:2306 , HOH B:2033 , HOH B:2067
BINDING SITE FOR RESIDUE MG A 349
04
AC4
SOFTWARE
GLU A:245 , HOH A:2214 , HOH A:2218 , HOH A:2270 , HOH A:2272 , HOH A:2273
BINDING SITE FOR RESIDUE MG A1337
05
AC5
SOFTWARE
ASP A:131 , ASP A:139 , ASP A:176 , HOH A:2172 , HOH A:2176 , HOH A:2212
BINDING SITE FOR RESIDUE MG A1338
06
AC6
SOFTWARE
ASP A:37 , ASP A:319 , LEU B:27 , HOH B:2060 , HOH B:2065
BINDING SITE FOR RESIDUE NA A1339
07
AC7
SOFTWARE
SER A:175 , MET A:177 , LYS A:205 , TYR A:232 , GLN A:233 , HOH A:2176
BINDING SITE FOR RESIDUE CL A1340
08
AC8
SOFTWARE
TYR A:147 , ASN A:150 , HOH A:2081 , HOH A:2191
BINDING SITE FOR RESIDUE CL A1342
09
AC9
SOFTWARE
GLU B:245 , HOH B:2233 , HOH B:2234 , HOH B:2237 , HOH B:2276 , HOH B:2277
BINDING SITE FOR RESIDUE MG B1337
10
BC1
SOFTWARE
ASP B:131 , ASP B:139 , ASP B:176 , HOH B:2203 , HOH B:2229 , HOH B:2251
BINDING SITE FOR RESIDUE MG B1338
11
BC2
SOFTWARE
LEU A:27 , HOH A:2053 , HOH A:2058 , ASP B:37 , ASP B:319 , HOH B:2085
BINDING SITE FOR RESIDUE NA B1339
12
BC3
SOFTWARE
TYR A:10 , TYR A:12 , ARG A:14 , GLU B:187 , GLU B:190
BINDING SITE FOR RESIDUE PGE A1341
13
BC4
SOFTWARE
GLU A:187 , GLU A:190 , SER A:191 , TYR B:10 , TYR B:12 , ARG B:14 , HOH B:2325
BINDING SITE FOR RESIDUE PGE B1340
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: D_ALA_DEHYDRATASE (A:253-265,B:253-265)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_ALA_DEHYDRATASE
PS00169
Delta-aminolevulinic acid dehydratase active site.
HEM2_PSEAE
253-265
8
A:253-265
B:253-265
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2c18a_ (A:)
1b: SCOP_d2c18b_ (B:)
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(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(36)
Protein domain
:
automated matches
(15)
Pseudomonas aeruginosa [TaxId: 287]
(8)
1a
d2c18a_
A:
1b
d2c18b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2c18B00 (B:2-336)
1b: CATH_2c18A00 (A:3-336)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Pseudomonas aeruginosa. Organism_taxid: 287.
(10)
1a
2c18B00
B:2-336
1b
2c18A00
A:3-336
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Pfam Domains
(0, 0)
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Asym.Unit (133 KB)
Header - Asym.Unit
Biol.Unit 1 (493 KB)
Header - Biol.Unit 1
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