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2C0I
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
SRC FAMILY KINASE HCK WITH BOUND INHIBITOR A-420983
Authors
:
D. W. Borhani, A. Burchat, D. J. Calderwood, G. C. Hirst, B. Li, A. Loew
Date
:
03 Sep 05 (Deposition) - 20 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tyrosine-Protein Kinase, Transferase, Atp-Binding, Kinase, Lipoprotein, Myristate, Nucleotide-Binding, Palmitate, Phosphorylation, Sh2 Domain, Sh3 Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Burchat, D. W. Borhani, D. J. Calderwood, G. C. Hirst, B. Li, R. F. Stachlewitz
Discovery Of A-770041, A Src-Family Selective Orally Active Lck Inhibitor That Prevents Organ Allograft Rejection.
Bioorg. Med. Chem. Lett. V. 16 118 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: N-(4-{4-AMINO-1-[4-(4-METHYLPIPERA... (L1Ga)
2b: N-(4-{4-AMINO-1-[4-(4-METHYLPIPERA... (L1Gb)
3a: O-PHOSPHOTYROSINE (PTRa)
3b: O-PHOSPHOTYROSINE (PTRb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
L1G
2
Ligand/Ion
N-(4-{4-AMINO-1-[4-(4-METHYLPIPERAZIN-1-YL)-TRANS-CYCLOHEXYL]-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL}-2-METHOXYPHENYL)-1-METHYL-1H-INDOLE-2-CARBOXAMIDE
3
PTR
2
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:498 , PTR A:501 , HOH A:2166 , HOH A:2169 , HOH A:2171 , GLU B:464
BINDING SITE FOR RESIDUE CA A1507
2
AC2
SOFTWARE
GLU A:464 , GLU B:498 , PTR B:501 , HOH B:2088 , HOH B:2089 , HOH B:2096
BINDING SITE FOR RESIDUE CA B1507
3
AC3
SOFTWARE
LEU A:247 , ALA A:267 , LYS A:269 , PHE A:281 , ILE A:310 , THR A:312 , GLU A:313 , MET A:315 , ASP A:322 , LEU A:367 , ASP A:378 , PHE A:379 , HOH A:2173 , HOH A:2174
BINDING SITE FOR RESIDUE L1G A1506
4
AC4
SOFTWARE
VAL B:255 , ALA B:267 , VAL B:268 , LYS B:269 , VAL B:297 , ILE B:310 , THR B:312 , GLU B:313 , MET B:315 , ASP B:322 , LEU B:367 , ALA B:377 , ASP B:378 , PHE B:379 , LEU B:381 , HOH B:2099
BINDING SITE FOR RESIDUE L1G B1506
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041708 (M84L, chain A/B, )
2: VAR_041709 (D378G, chain A/B, )
3: VAR_033836 (P481Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041708
M
105
L
HCK_HUMAN
Polymorphism
55722810
A/B
M
84
L
2
UniProt
VAR_041709
D
399
G
HCK_HUMAN
Unclassified
---
A/B
D
378
G
3
UniProt
VAR_033836
P
502
Q
HCK_HUMAN
Polymorphism
17093828
A/B
P
481
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:123-220,B:123-220)
2: PROTEIN_KINASE_ATP (A:247-269,B:247-269)
3: PROTEIN_KINASE_TYR (A:356-368,B:356-368)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
HCK_HUMAN
144-241
2
A:123-220
B:123-220
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
HCK_HUMAN
268-290
2
A:247-269
B:247-269
3
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
HCK_HUMAN
377-389
2
A:356-368
B:356-368
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.6a (A:59-89 | B:59-89)
Exon 1.7 (A:89-122 | B:89-122)
Exon 1.8 (A:122-157 | B:122-157)
Exon 1.9 (A:157-207 | B:157-207)
Exon 1.10 (A:207-258 | B:207-258)
Exon 1.11 (A:258-318 | B:258-318)
Exon 1.12 (A:318-343 | B:318-343)
Exon 1.13 (A:344-385 | B:344-385)
Exon 1.14 (A:399-439 | B:399-439)
Exon 1.15d (A:439-505 | B:439-505)
View:
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All Exon Boundaries
01: Boundary 1.5/1.6a
02: Boundary 1.6a/1.7
03: Boundary 1.7/1.8
04: Boundary 1.8/1.9
05: Boundary 1.9/1.10
06: Boundary 1.10/1.11
07: Boundary 1.11/1.12
08: Boundary 1.12/1.13
09: Boundary 1.13/1.14
10: Boundary 1.14/1.15d
11: Boundary 1.15d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000375852
1c
ENSE00002183369
chr20:
30640064-30640289
226
HCK_HUMAN
1-21
21
0
-
-
1.4a
ENST00000375852
4a
ENSE00001592701
chr20:
30659465-30659585
121
HCK_HUMAN
21-61
41
0
-
-
1.5
ENST00000375852
5
ENSE00000661152
chr20:
30661122-30661164
43
HCK_HUMAN
62-76
15
0
-
-
1.6a
ENST00000375852
6a
ENSE00000661153
chr20:
30661519-30661621
103
HCK_HUMAN
76-110
35
2
A:59-89
B:59-89
31
31
1.7
ENST00000375852
7
ENSE00000661154
chr20:
30662426-30662524
99
HCK_HUMAN
110-143
34
2
A:89-122
B:89-122
34
34
1.8
ENST00000375852
8
ENSE00000661155
chr20:
30667577-30667680
104
HCK_HUMAN
143-178
36
2
A:122-157
B:122-157
36
36
1.9
ENST00000375852
9
ENSE00000661156
chr20:
30671697-30671846
150
HCK_HUMAN
178-228
51
2
A:157-207
B:157-207
51
51
1.10
ENST00000375852
10
ENSE00000661157
chr20:
30672194-30672346
153
HCK_HUMAN
228-279
52
2
A:207-258
B:207-258
52
52
1.11
ENST00000375852
11
ENSE00000661158
chr20:
30674431-30674610
180
HCK_HUMAN
279-339
61
2
A:258-318
B:258-318
61
61
1.12
ENST00000375852
12
ENSE00000661159
chr20:
30676371-30676447
77
HCK_HUMAN
339-364
26
2
A:318-343
B:318-343
26
26
1.13
ENST00000375852
13
ENSE00001612642
chr20:
30681666-30681819
154
HCK_HUMAN
365-416
52
2
A:344-385
B:344-385
42
42
1.14
ENST00000375852
14
ENSE00001636203
chr20:
30686807-30686938
132
HCK_HUMAN
416-460
45
2
A:399-439
B:399-439
41
41
1.15d
ENST00000375852
15d
ENSE00001468583
chr20:
30689120-30689659
540
HCK_HUMAN
460-526
67
2
A:439-505
B:439-505
67
67
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2c0ia1 (A:59-120)
1b: SCOP_d2c0ib1 (B:59-120)
2a: SCOP_d2c0ia3 (A:224-505)
2b: SCOP_d2c0ib3 (B:224-505)
3a: SCOP_d2c0ia2 (A:121-223)
3b: SCOP_d2c0ib2 (B:121-223)
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)
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Protein Domains
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)
(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Hemapoetic cell kinase Hck
(20)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2c0ia1
A:59-120
1b
d2c0ib1
B:59-120
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Haemopoetic cell kinase Hck
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
2a
d2c0ia3
A:224-505
2b
d2c0ib3
B:224-505
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Hemopoetic cell kinase Hck
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
3a
d2c0ia2
A:121-223
3b
d2c0ib2
B:121-223
[
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_2c0iA03 (A:233-318)
1b: CATH_2c0iB03 (B:233-318)
2a: CATH_2c0iA02 (A:121-222)
2b: CATH_2c0iB02 (B:121-222)
3a: CATH_2c0iA04 (A:319-493)
3b: CATH_2c0iB04 (B:319-493)
4a: CATH_2c0iA01 (A:59-120)
4b: CATH_2c0iB01 (B:59-120)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2c0iA03
A:233-318
1b
2c0iB03
B:233-318
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
2a
2c0iA02
A:121-222
2b
2c0iB02
B:121-222
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
2c0iA04
A:319-493
3b
2c0iB04
B:319-493
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
4a
2c0iA01
A:59-120
4b
2c0iB01
B:59-120
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (159 KB)
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Header - Biol.Unit 1
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