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2C0A
Asym. Unit
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Asym.Unit (224 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
MECHANISM OF THE CLASS I KDPG ALDOLASE
Authors
:
M. J. Hutchins, S. W. B. Fullerton, E. J. Toone, J. H. Naismith
Date
:
29 Aug 05 (Deposition) - 01 Sep 05 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Aldolase, Lyase, Multifunctional Enzyme, Schiff Base
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. W. B. Fullerton, J. S. Griffiths, A. B. Merkel, M. Cheriyann, J. Wymer, M. J. Hutchins, C. A. Fierke, E. J. Toone, J. H. Naismith
Mechanism Of The Class I Kdpg Aldolase.
Bioorg. Med. Chem. V. 14 3002 2006
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
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No.
Name
Count
Type
Full Name
1
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:162 , GLY A:163 , GLY A:183 , SER A:184 , HOH A:2197 , HOH A:2241 , HOH A:2242 , HOH A:2243 , HOH A:2244 , HOH A:2245
BINDING SITE FOR RESIDUE PO4 A1214
2
AC2
SOFTWARE
GLY B:162 , GLY B:163 , GLY B:183 , SER B:184 , HOH B:2238 , HOH B:2239 , HOH B:2240 , HOH B:2241 , HOH B:2242 , HOH B:2243
BINDING SITE FOR RESIDUE PO4 B1214
3
AC3
SOFTWARE
ALA B:0 , TRP B:4 , SER B:7 , ALA B:8 , GLU B:9 , GLU B:131 , HOH B:2244 , HOH B:2245 , HOH B:2246 , HOH B:2247
BINDING SITE FOR RESIDUE PO4 B1215
4
AC4
SOFTWARE
GLY C:162 , GLY C:163 , GLY C:183 , SER C:184 , HOH C:2197 , HOH C:2241 , HOH C:2242 , HOH C:2243 , HOH C:2244 , HOH C:2245
BINDING SITE FOR RESIDUE PO4 C1214
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_KDPG_KHG_1 (A:40-49,B:40-49,C:40-49,A:40-49,B:...)
2: ALDOLASE_KDPG_KHG_2 (A:128-141,B:128-141,C:128-141,A:12...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_KDPG_KHG_1
PS00159
KDPG and KHG aldolases active site.
ALKH_ECO57
40-49
3
A:40-49
B:40-49
C:40-49
ALKH_ECOL6
40-49
3
A:40-49
B:40-49
C:40-49
ALKH_ECOLI
40-49
3
A:40-49
B:40-49
C:40-49
ALKH_SHIFL
40-49
3
A:40-49
B:40-49
C:40-49
2
ALDOLASE_KDPG_KHG_2
PS00160
KDPG and KHG aldolases Schiff-base forming residue.
ALKH_ECO57
128-141
3
A:128-141
B:128-141
C:128-141
ALKH_ECOL6
128-141
3
A:128-141
B:128-141
C:128-141
ALKH_ECOLI
128-141
3
A:128-141
B:128-141
C:128-141
ALKH_SHIFL
128-141
3
A:128-141
B:128-141
C:128-141
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2c0aa_ (A:)
1b: SCOP_d2c0ab_ (B:)
1c: SCOP_d2c0ac_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
KDPG aldolase
(9)
Escherichia coli [TaxId: 562]
(7)
1a
d2c0aa_
A:
1b
d2c0ab_
B:
1c
d2c0ac_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2c0aB00 (B:0-213)
1b: CATH_2c0aA00 (A:1-213)
1c: CATH_2c0aC00 (C:1-213)
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(
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Escherichia coli. Organism_taxid: 562.
(44)
1a
2c0aB00
B:0-213
1b
2c0aA00
A:1-213
1c
2c0aC00
C:1-213
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (224 KB)
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