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2BZD
Biol. Unit 1
Info
Asym.Unit (311 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (105 KB)
Biol.Unit 3 (107 KB)
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(1)
Title
:
GALACTOSE RECOGNITION BY THE CARBOHYDRATE-BINDING MODULE OF A BACTERIAL SIALIDASE.
Authors
:
S. L. Newstead, G. Taylor
Date
:
16 Aug 05 (Deposition) - 19 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Sialidase, Hydrolase, Carbohydrate Binding Module, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. L. Newstead, J. N. Watson, A. J. Bennet, G. Taylor
Galactose Recognition By The Carbohydrate-Binding Module Of A Bacterial Sialidase.
Acta Crystallogr. , Sect. D V. 61 1483 2005
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
2
GOL
1
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:522 , HIS A:539 , TRP A:542 , ARG A:572 , GLU A:578 , TYR A:635 , HOH A:2358 , HOH A:2359
BINDING SITE FOR RESIDUE GAL A1649
2
AC4
SOFTWARE
ASN A:528 , ASP A:531 , ASN A:533 , THR A:536 , ALA A:639 , GLU A:640
BINDING SITE FOR RESIDUE NA A1648
3
AC7
SOFTWARE
ARG A:68 , ARG A:276 , ARG A:342 , TYR A:370 , HOH A:2360 , HOH A:2361
BINDING SITE FOR RESIDUE GOL A1650
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FA58C_3 (A:496-646)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
NANH_MICVI
496-646
1
A:496-646
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d2bzda1 (A:47-402)
1b: SCOP_d2bzdb1 (B:47-402)
1c: SCOP_d2bzdc1 (C:48-402)
2a: SCOP_d2bzda3 (A:506-647)
2b: SCOP_d2bzdb3 (B:506-647)
2c: SCOP_d2bzdc3 (C:506-647)
3a: SCOP_d2bzda2 (A:403-505)
3b: SCOP_d2bzdb2 (B:403-505)
3c: SCOP_d2bzdc2 (C:403-505)
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Micromonospora viridifaciens [TaxId: 1881]
(3)
1a
d2bzda1
A:47-402
1b
d2bzdb1
B:47-402
1c
d2bzdc1
C:48-402
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Micromonospora viridifaciens [TaxId: 1881]
(3)
2a
d2bzda3
A:506-647
2b
d2bzdb3
B:506-647
2c
d2bzdc3
C:506-647
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
automated matches
(93)
Protein domain
:
automated matches
(93)
Micromonospora viridifaciens [TaxId: 1881]
(3)
3a
d2bzda2
A:403-505
3b
d2bzdb2
B:403-505
3c
d2bzdc2
C:403-505
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_2bzdA01 (A:47-400)
1b: CATH_2bzdB01 (B:47-400)
1c: CATH_2bzdC01 (C:48-400)
2a: CATH_2bzdA02 (A:401-502)
2b: CATH_2bzdB02 (B:401-502)
2c: CATH_2bzdC02 (C:401-502)
3a: CATH_2bzdA03 (A:503-647)
3b: CATH_2bzdB03 (B:503-647)
3c: CATH_2bzdC03 (C:503-647)
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)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Micromonospora viridifaciens. Organism_taxid: 1881.
(9)
1a
2bzdA01
A:47-400
1b
2bzdB01
B:47-400
1c
2bzdC01
C:48-400
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Micromonospora viridifaciens. Organism_taxid: 1881.
(7)
2a
2bzdA02
A:401-502
2b
2bzdB02
B:401-502
2c
2bzdC02
C:401-502
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Micromonospora viridifaciens. Organism_taxid: 1881.
(7)
3a
2bzdA03
A:503-647
3b
2bzdB03
B:503-647
3c
2bzdC03
C:503-647
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (311 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
Biol.Unit 3 (107 KB)
Header - Biol.Unit 3
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