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Getting 'Biological Unit' information from database.
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2BYY
Biol. Unit 1
Info
Asym.Unit (254 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (127 KB)
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(1)
Title
:
E. COLI KAS I H298E MUTATION
Authors
:
J. G. Olsen, P. Von Wettstein-Knowles, A. Henriksen
Date
:
09 Aug 05 (Deposition) - 01 Feb 06 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Acyltransferase, Claisen Condensation, Fatty Acid Biosynthesis, Fatty Acid Synthase, Thiolase Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Von Wettstein-Knowles, J. G. Olsen, K. A. Mcguire, A. Henriksen
Fatty Acid Synthesis. Role Of Active Site Histidines And Lysine In Cys-His-His-Type Beta- Ketoacyl-Acyl Carrier Protein Synthases.
Febs J. V. 273 695 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: AMMONIUM ION (NH4a)
1b: AMMONIUM ION (NH4b)
1c: AMMONIUM ION (NH4c)
1d: AMMONIUM ION (NH4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NH4
2
Ligand/Ion
AMMONIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:296 , SER A:297 , GLU A:342 , SER A:387 , ASN A:388
BINDING SITE FOR RESIDUE NH4 A1406
2
AC2
SOFTWARE
ASN B:296 , SER B:297 , GLU B:342 , SER B:387 , ASN B:388
BINDING SITE FOR RESIDUE NH4 B1406
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain A/B, )
2: VAR_FABB_ECOLI_002 (S140F, chain A/B, )
3: VAR_FABB_ECOLI_003 (G299S, chain A/B, )
4: VAR_FABB_ECOLI_004 (A329V, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
A/B
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
A/B
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
A/B
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
A/B
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:154-170,B:154-170)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOL6
154-170
2
A:154-170
B:154-170
-
-
FABB_ECOLI
154-170
2
A:154-170
B:154-170
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2byya2 (A:254-406)
1b: SCOP_d2byyb2 (B:254-406)
1c: SCOP_d2byyc2 (C:254-406)
1d: SCOP_d2byyd2 (D:254-406)
2a: SCOP_d2byya1 (A:1-253)
2b: SCOP_d2byyb1 (B:1-253)
2c: SCOP_d2byyc1 (C:1-253)
2d: SCOP_d2byyd1 (D:1-253)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Escherichia coli [TaxId: 562]
(8)
1a
d2byya2
A:254-406
1b
d2byyb2
B:254-406
1c
d2byyc2
C:254-406
1d
d2byyd2
D:254-406
Family
:
Thiolase-related
(67)
Protein domain
:
automated matches
(12)
Escherichia coli [TaxId: 562]
(6)
2a
d2byya1
A:1-253
2b
d2byyb1
B:1-253
2c
d2byyc1
C:1-253
2d
d2byyd1
D:1-253
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2byyB02 (B:260-406)
1b: CATH_2byyA01 (A:6-259)
1c: CATH_2byyB01 (B:6-259)
1d: CATH_2byyC01 (C:6-259)
1e: CATH_2byyD01 (D:6-259)
1f: CATH_2byyC02 (C:260-406)
1g: CATH_2byyD02 (D:260-406)
1h: CATH_2byyA02 (A:260-404)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(23)
1a
2byyB02
B:260-406
1b
2byyA01
A:6-259
1c
2byyB01
B:6-259
1d
2byyC01
C:6-259
1e
2byyD01
D:6-259
1f
2byyC02
C:260-406
1g
2byyD02
D:260-406
1h
2byyA02
A:260-404
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (254 KB)
Header - Asym.Unit
Biol.Unit 1 (127 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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