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2BY4
Asym. Unit
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Asym.Unit (167 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN DERIVATIVE BOC-12ADT.
Authors
:
A. L. Jensen, J. V. Moller, H. Soehoel, S. R. Denmeade, J. T. Isaacs, C. E. Olsen, S. B. Christensen, P. Nissen
Date
:
28 Jul 05 (Deposition) - 07 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Serca, P-Type Atpase, Ca2+-Atpase, Thapsigargin, Prostate Cancer, Atp-Binding, Calcium, Calcium Transport, Endoplasmic Reticulum, Hydrolase, Ion Transport, Magnesium, Metal-Binding, Multigene Family, Nucleotide-Binding, Phosphorylation, Sarcoplasmic Reticulum, Transmembrane, Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Soehoel, A. L. Jensen, J. V. Moller, P. Nissen, S. R. Denmeade, J. T. Isaacs, C. E. Olsen, S. B. Christensen
Natural Products As Starting Materials For Development Of Second-Generation Serca Inhibitors Targeted Towards Prostate Cancer Cells
Bioorg. Med. Chem. V. 14 2810 2006
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
2a: (3S,3AR,4S,6S,6AR,7S,8S,9BS)-6-(AC... (AD4a)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SODIUM ION (NAa)
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No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
AD4
1
Ligand/Ion
(3S,3AR,4S,6S,6AR,7S,8S,9BS)-6-(ACETYLOXY)-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-{[(2Z)-2-METHYLBUT-2-ENOYL]OXY}-7-(OCTANOYLOXY)-2-OXO-2,3,3A,4,5,6,6A,7,8,9B-DECAHYDROAZULENO[4,5-B]FURAN-4-YL 12-[(TERT-BUTOXYCARBONYL)AMINO]DODECANOATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
NA
1
Ligand/Ion
SODIUM ION
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Sites
(5, 5)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:439 , THR A:441 , ACP A:1996
BINDING SITE FOR RESIDUE MG A1997
2
AC2
SOFTWARE
ASP A:703 , ASP A:707
BINDING SITE FOR RESIDUE MG A1998
3
AC3
SOFTWARE
GLN A:244 , LYS A:712 , ALA A:714 , GLU A:732
BINDING SITE FOR RESIDUE NA A1999
4
AC4
SOFTWARE
LEU A:61 , VAL A:62 , ASN A:101 , LEU A:253 , GLU A:255 , PHE A:256 , GLN A:259 , LEU A:260 , VAL A:263 , ALA A:306 , ILE A:307 , PRO A:308 , LEU A:311 , PRO A:312 , ILE A:765 , VAL A:772 , LEU A:828 , ILE A:829 , PHE A:834 , TYR A:837
BINDING SITE FOR RESIDUE AD4 A1995
5
AC5
SOFTWARE
THR A:353 , THR A:441 , GLU A:442 , PHE A:487 , LYS A:515 , ALA A:517 , ARG A:560 , GLY A:626 , MG A:1997
BINDING SITE FOR RESIDUE ACP A1996
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ATPASE_E1_E2 (A:351-357)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_E1_E2
PS00154
E1-E2 ATPases phosphorylation site.
AT2A1_RABIT
351-357
1
A:351-357
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_2by4A04 (A:359-602)
2a: CATH_2by4A03 (A:346-358,A:603-745)
3a: CATH_2by4A02 (A:55-112,A:241-345,A:746-994)
4a: CATH_2by4A01 (A:12-54,A:113-240)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Rabbit (Oryctolagus cuniculus)
(31)
1a
2by4A04
A:359-602
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Rabbit (Oryctolagus cuniculus)
(31)
2a
2by4A03
A:346-358,A:603-745
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Calcium-transporting ATPase, transmembrane domain
(36)
Homologous Superfamily
:
Calcium-transporting ATPase, transmembrane domain
(36)
Rabbit (Oryctolagus cuniculus)
(31)
3a
2by4A02
A:55-112,A:241-345,A:746-994
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Rabbit (Oryctolagus cuniculus)
(31)
4a
2by4A01
A:12-54,A:113-240
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Pfam Domains
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Chain A
Asymmetric Unit 1
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