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2BXD
Biol. Unit 2
Info
Asym.Unit (183 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
HUMAN SERUM ALBUMIN COMPLEXED WITH WARFARIN
Authors
:
J. Ghuman, P. A. Zunszain, I. Petitpas, A. A. Bhattacharya, S. Curry
Date
:
26 Jul 05 (Deposition) - 22 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transport Protein, Albumin, Carrier Protein, Lipid-Binding, Metal-Binding, Drug-Binding, Warfarin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Ghuman, P. A. Zunszain, I. Petitpas, A. A. Bhattacharya, M. Otagiri, S. Curry
Structural Basis Of The Drug-Binding Specificity Of Human Serum Albumin.
J. Mol. Biol. V. 353 38 2005
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: R-WARFARIN (RWFa)
1b: R-WARFARIN (RWFb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
RWF
1
Ligand/Ion
R-WARFARIN
[
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]
Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
TYR B:150 , LYS B:199 , PHE B:211 , TRP B:214 , ARG B:222 , LEU B:238 , HIS B:242 , ARG B:257 , LEU B:260 , ALA B:291
BINDING SITE FOR RESIDUE RWF B2001
[
close Site info
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SAPs(SNPs)/Variants
(56, 56)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_010657 (F49Y, chain B, )
02: VAR_000507 (E60K, chain B, )
03: VAR_000508 (D63N, chain B, )
04: VAR_013011 (L66P, chain B, )
05: VAR_000509 (E82K, chain B, )
06: VAR_014290 (E97G, chain B, )
07: VAR_000510 (R114G, chain B, )
08: VAR_000511 (E119K, chain B, )
09: VAR_013012 (V122E, chain B, )
10: VAR_000512 (H128R, chain B, )
11: VAR_000513 (C177F, chain B, )
12: VAR_014291 (A191T, chain B, )
13: VAR_014292 (A191V, chain B, )
14: VAR_014293 (Q196L, chain B, )
15: VAR_000514 (R218H, chain B, )
16: VAR_013013 (R218P, chain B, )
17: VAR_000515 (K225Q, chain B, )
18: VAR_000516 (K240E, chain B, )
19: VAR_000517 (Q268R, chain B, )
20: VAR_000518 (D269G, chain B, )
21: VAR_000519 (K276N, chain B, )
22: VAR_000520 (K313N, chain B, )
23: VAR_013014 (D314G, chain B, )
24: VAR_013015 (D314V, chain B, )
25: VAR_000521 (N318K, chain B, )
26: VAR_000522 (A320T, chain B, )
27: VAR_000523 (E321K, chain B, )
28: VAR_000524 (E333K, chain B, )
29: VAR_000525 (E354K, chain B, )
30: VAR_000526 (E358K, chain B, )
31: VAR_013016 (K359N, chain B, )
32: VAR_000527 (D365H, chain B, )
33: VAR_000528 (D365V, chain B, )
34: VAR_000529 (K372E, chain B, )
35: VAR_000530 (D375N, chain B, )
36: VAR_000531 (E376K, chain B, )
37: VAR_000532 (E376Q, chain B, )
38: VAR_000533 (E382K, chain B, )
39: VAR_014294 (E396K, chain B, )
40: VAR_013017 (R410C, chain B, )
41: VAR_014295 (K466E, chain B, )
42: VAR_000534 (E479K, chain B, )
43: VAR_000535 (D494N, chain B, )
44: VAR_000536 (E501K, chain B, )
45: VAR_000537 (E505K, chain B, )
46: VAR_013018 (V533M, chain B, )
47: VAR_000538 (K536E, chain B, )
48: VAR_000539 (K541E, chain B, )
49: VAR_000541 (D550A, chain B, )
50: VAR_000540 (D550G, chain B, )
51: VAR_013019 (K560E, chain B, )
52: VAR_000542 (D563N, chain B, )
53: VAR_000543 (E565K, chain B, )
54: VAR_000544 (E570K, chain B, )
55: VAR_000545 (K573E, chain B, )
56: VAR_000546 (K574N, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_010657
F
73
Y
ALBU_HUMAN
Polymorphism
---
B
F
49
Y
02
UniProt
VAR_000507
E
84
K
ALBU_HUMAN
Unclassified
---
B
E
60
K
03
UniProt
VAR_000508
D
87
N
ALBU_HUMAN
Unclassified
---
B
D
63
N
04
UniProt
VAR_013011
L
90
P
ALBU_HUMAN
Unclassified
---
B
L
66
P
05
UniProt
VAR_000509
E
106
K
ALBU_HUMAN
Unclassified
---
B
E
82
K
06
UniProt
VAR_014290
E
121
G
ALBU_HUMAN
Polymorphism
---
B
E
97
G
07
UniProt
VAR_000510
R
138
G
ALBU_HUMAN
Unclassified
---
B
R
114
G
08
UniProt
VAR_000511
E
143
K
ALBU_HUMAN
Unclassified
---
B
E
119
K
09
UniProt
VAR_013012
V
146
E
ALBU_HUMAN
Unclassified
---
B
V
122
E
10
UniProt
VAR_000512
H
152
R
ALBU_HUMAN
Unclassified
---
B
H
128
R
11
UniProt
VAR_000513
C
201
F
ALBU_HUMAN
Unclassified
---
B
C
177
F
12
UniProt
VAR_014291
A
215
T
ALBU_HUMAN
Polymorphism
3210154
B
A
191
T
13
UniProt
VAR_014292
A
215
V
ALBU_HUMAN
Polymorphism
3204504
B
A
191
V
14
UniProt
VAR_014293
Q
220
L
ALBU_HUMAN
Polymorphism
3210163
B
Q
196
L
15
UniProt
VAR_000514
R
242
H
ALBU_HUMAN
Unclassified
---
B
R
218
H
16
UniProt
VAR_013013
R
242
P
ALBU_HUMAN
Unclassified
---
B
R
218
P
17
UniProt
VAR_000515
K
249
Q
ALBU_HUMAN
Unclassified
---
B
K
225
Q
18
UniProt
VAR_000516
K
264
E
ALBU_HUMAN
Unclassified
---
B
K
240
E
19
UniProt
VAR_000517
Q
292
R
ALBU_HUMAN
Unclassified
---
B
Q
268
R
20
UniProt
VAR_000518
D
293
G
ALBU_HUMAN
Unclassified
---
B
D
269
G
21
UniProt
VAR_000519
K
300
N
ALBU_HUMAN
Unclassified
---
B
K
276
N
22
UniProt
VAR_000520
K
337
N
ALBU_HUMAN
Unclassified
---
B
K
313
N
23
UniProt
VAR_013014
D
338
G
ALBU_HUMAN
Unclassified
---
B
D
314
G
24
UniProt
VAR_013015
D
338
V
ALBU_HUMAN
Unclassified
---
B
D
314
V
25
UniProt
VAR_000521
N
342
K
ALBU_HUMAN
Unclassified
---
B
N
318
K
26
UniProt
VAR_000522
A
344
T
ALBU_HUMAN
Unclassified
---
B
A
320
T
27
UniProt
VAR_000523
E
345
K
ALBU_HUMAN
Unclassified
---
B
E
321
K
28
UniProt
VAR_000524
E
357
K
ALBU_HUMAN
Unclassified
---
B
E
333
K
29
UniProt
VAR_000525
E
378
K
ALBU_HUMAN
Unclassified
---
B
E
354
K
30
UniProt
VAR_000526
E
382
K
ALBU_HUMAN
Unclassified
---
B
E
358
K
31
UniProt
VAR_013016
K
383
N
ALBU_HUMAN
Unclassified
---
B
K
359
N
32
UniProt
VAR_000527
D
389
H
ALBU_HUMAN
Unclassified
---
B
D
365
H
33
UniProt
VAR_000528
D
389
V
ALBU_HUMAN
Unclassified
---
B
D
365
V
34
UniProt
VAR_000529
K
396
E
ALBU_HUMAN
Unclassified
---
B
K
372
E
35
UniProt
VAR_000530
D
399
N
ALBU_HUMAN
Unclassified
---
B
D
375
N
36
UniProt
VAR_000531
E
400
K
ALBU_HUMAN
Unclassified
---
B
E
376
K
37
UniProt
VAR_000532
E
400
Q
ALBU_HUMAN
Unclassified
---
B
E
376
Q
38
UniProt
VAR_000533
E
406
K
ALBU_HUMAN
Unclassified
---
B
E
382
K
39
UniProt
VAR_014294
E
420
K
ALBU_HUMAN
Polymorphism
---
B
E
396
K
40
UniProt
VAR_013017
R
434
C
ALBU_HUMAN
Unclassified
---
B
R
410
C
41
UniProt
VAR_014295
K
490
E
ALBU_HUMAN
Polymorphism
1063469
B
K
466
E
42
UniProt
VAR_000534
E
503
K
ALBU_HUMAN
Unclassified
---
B
E
479
K
43
UniProt
VAR_000535
D
518
N
ALBU_HUMAN
Unclassified
---
B
D
494
N
44
UniProt
VAR_000536
E
525
K
ALBU_HUMAN
Unclassified
---
B
E
501
K
45
UniProt
VAR_000537
E
529
K
ALBU_HUMAN
Unclassified
---
B
E
505
K
46
UniProt
VAR_013018
V
557
M
ALBU_HUMAN
Polymorphism
78284052
B
V
533
M
47
UniProt
VAR_000538
K
560
E
ALBU_HUMAN
Unclassified
---
B
K
536
E
48
UniProt
VAR_000539
K
565
E
ALBU_HUMAN
Unclassified
---
B
K
541
E
49
UniProt
VAR_000541
D
574
A
ALBU_HUMAN
Unclassified
---
B
D
550
A
50
UniProt
VAR_000540
D
574
G
ALBU_HUMAN
Unclassified
---
B
D
550
G
51
UniProt
VAR_013019
K
584
E
ALBU_HUMAN
Unclassified
---
B
K
560
E
52
UniProt
VAR_000542
D
587
N
ALBU_HUMAN
Unclassified
---
B
D
563
N
53
UniProt
VAR_000543
E
589
K
ALBU_HUMAN
Unclassified
---
B
E
565
K
54
UniProt
VAR_000544
E
594
K
ALBU_HUMAN
Unclassified
---
B
E
570
K
55
UniProt
VAR_000545
K
597
E
ALBU_HUMAN
Unclassified
---
B
K
573
E
56
UniProt
VAR_000546
K
598
N
ALBU_HUMAN
Unclassified
---
B
K
574
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: ALBUMIN_2 (B:380-577)
2: ALBUMIN_1 (B:551-575)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALBUMIN_2
PS51438
Albumin domain profile.
ALBU_HUMAN
19-210
211-403
404-601
2
-
-
B:187-379
-
B:380-577
2
ALBUMIN_1
PS00212
Albumin domain signature.
ALBU_HUMAN
185-209
377-401
575-599
3
-
B:161-185
-
B:353-377
-
B:551-575
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2bxda1 (A:197-388)
1b: SCOP_d2bxda2 (A:389-582)
1c: SCOP_d2bxda3 (A:5-196)
1d: SCOP_d2bxdb1 (B:197-388)
1e: SCOP_d2bxdb2 (B:389-582)
1f: SCOP_d2bxdb3 (B:5-196)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Serum albumin-like
(99)
Superfamily
:
Serum albumin-like
(99)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d2bxda1
A:197-388
1b
d2bxda2
A:389-582
1c
d2bxda3
A:5-196
1d
d2bxdb1
B:197-388
1e
d2bxdb2
B:389-582
1f
d2bxdb3
B:5-196
[
close SCOP info
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2bxdA03 (A:205-296)
1b: CATH_2bxdA02 (A:108-197)
1c: CATH_2bxdB02 (B:108-197)
1d: CATH_2bxdA04 (A:297-382)
1e: CATH_2bxdB04 (B:297-382)
1f: CATH_2bxdA01 (A:5-107)
1g: CATH_2bxdB01 (B:5-107)
1h: CATH_2bxdA06 (A:495-572)
1i: CATH_2bxdB06 (B:495-572)
1j: CATH_2bxdA05 (A:383-494)
1k: CATH_2bxdB05 (B:383-494)
1l: CATH_2bxdB03 (B:205-296)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Serum Albumin; Chain A, Domain 1
(74)
Homologous Superfamily
:
[code=1.10.246.10, no name defined]
(60)
Human (Homo sapiens)
(57)
1a
2bxdA03
A:205-296
1b
2bxdA02
A:108-197
1c
2bxdB02
B:108-197
1d
2bxdA04
A:297-382
1e
2bxdB04
B:297-382
1f
2bxdA01
A:5-107
1g
2bxdB01
B:5-107
1h
2bxdA06
A:495-572
1i
2bxdB06
B:495-572
1j
2bxdA05
A:383-494
1k
2bxdB05
B:383-494
1l
2bxdB03
B:205-296
[
close CATH info
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Pfam Domains
(0, 0)
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all PFAM domains
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