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2BWQ
Asym. Unit
Info
Asym.Unit (30 KB)
Biol.Unit 1 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RIM2 C2A-DOMAIN AT 1.4 ANGSTROM RESOLUTION
Authors
:
H. Dai, D. R. Tomchick, J. Garcia, T. C. Sudhof, M. Machius, J. Rizo
Date
:
15 Jul 05 (Deposition) - 20 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.41
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
C2 Domain, Neurotransmitter Release, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Dai, D. R. Tomchick, J. Garcia, T. C. Sudhof, M. Machius, J. Rizo
Crystal Structure Of The Rim2 C(2)A-Domain At 1. 4 A Resolution.
Biochemistry V. 44 13533 2005
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:742 , HIS A:804 , ARG A:805 , ARG A:806 , HOH A:2024 , HOH A:2110
BINDING SITE FOR RESIDUE SO4 A 901
2
AC2
SOFTWARE
ARG A:806 , HOH A:2111
BINDING SITE FOR RESIDUE SO4 A 902
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: C2 (A:740-835|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C2
PS50004
C2 domain profile.
RIMS2_RAT
756-851
1415-1503
1
A:740-835
-
[
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Exons
(4, 4)
Info
All Exons
Exon 1.14 (A:725-732)
Exon 1.16 (A:733-776)
Exon 1.17 (A:776-833 (gaps))
Exon 1.18 (A:834-853)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.13/1.14
2: Boundary 1.14/1.15
3: Boundary 1.15/1.16
4: Boundary 1.16/1.17
5: Boundary 1.17/1.18
6: Boundary 1.18/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000050753
1
ENSRNOE00000454594
chr7:
74757003-74757229
227
RIMS2_RAT
1-59
59
0
-
-
1.4
ENSRNOT00000050753
4
ENSRNOE00000223871
chr7:
74862495-74862705
211
RIMS2_RAT
59-129
71
0
-
-
1.5
ENSRNOT00000050753
5
ENSRNOE00000223852
chr7:
74922056-74922366
311
RIMS2_RAT
130-233
104
0
-
-
1.7
ENSRNOT00000050753
7
ENSRNOE00000245525
chr7:
75007836-75008761
926
RIMS2_RAT
233-542
310
0
-
-
1.8
ENSRNOT00000050753
8
ENSRNOE00000236412
chr7:
75022293-75022360
68
RIMS2_RAT
542-564
23
0
-
-
1.10
ENSRNOT00000050753
10
ENSRNOE00000309334
chr7:
75024249-75024368
120
RIMS2_RAT
565-604
40
0
-
-
1.11
ENSRNOT00000050753
11
ENSRNOE00000313303
chr7:
75026216-75026315
100
RIMS2_RAT
605-638
34
0
-
-
1.12
ENSRNOT00000050753
12
ENSRNOE00000342737
chr7:
75027291-75027414
124
RIMS2_RAT
638-679
42
0
-
-
1.13
ENSRNOT00000050753
13
ENSRNOE00000310460
chr7:
75029686-75029732
47
RIMS2_RAT
679-695
17
0
-
-
1.14
ENSRNOT00000050753
14
ENSRNOE00000300188
chr7:
75032477-75032589
113
RIMS2_RAT
695-732
38
1
A:725-732
8
1.15
ENSRNOT00000050753
15
ENSRNOE00000328054
chr7:
75038397-75038444
48
RIMS2_RAT
733-748
16
0
-
-
1.16
ENSRNOT00000050753
16
ENSRNOE00000236330
chr7:
75041602-75041732
131
RIMS2_RAT
749-792
44
1
A:733-776
44
1.17
ENSRNOT00000050753
17
ENSRNOE00000236358
chr7:
75048205-75048376
172
RIMS2_RAT
792-849
58
1
A:776-833 (gaps)
58
1.18
ENSRNOT00000050753
18
ENSRNOE00000236351
chr7:
75050571-75050724
154
RIMS2_RAT
850-901
52
1
A:834-853
20
1.19
ENSRNOT00000050753
19
ENSRNOE00000236324
chr7:
75081091-75081159
69
RIMS2_RAT
901-924
24
0
-
-
1.20
ENSRNOT00000050753
20
ENSRNOE00000236341
chr7:
75090877-75091033
157
RIMS2_RAT
924-976
53
0
-
-
1.21
ENSRNOT00000050753
21
ENSRNOE00000045881
chr7:
75092194-75092304
111
RIMS2_RAT
976-1013
38
0
-
-
1.22
ENSRNOT00000050753
22
ENSRNOE00000329316
chr7:
75098602-75098667
66
RIMS2_RAT
1013-1035
23
0
-
-
1.23
ENSRNOT00000050753
23
ENSRNOE00000046081
chr7:
75109786-75109965
180
RIMS2_RAT
1035-1095
61
0
-
-
1.24
ENSRNOT00000050753
24
ENSRNOE00000350038
chr7:
75110820-75110929
110
RIMS2_RAT
1095-1132
38
0
-
-
1.25
ENSRNOT00000050753
25
ENSRNOE00000359488
chr7:
75130866-75130907
42
RIMS2_RAT
1132-1146
15
0
-
-
1.26
ENSRNOT00000050753
26
ENSRNOE00000223420
chr7:
75139420-75139520
101
RIMS2_RAT
1146-1179
34
0
-
-
1.28
ENSRNOT00000050753
28
ENSRNOE00000248632
chr7:
75159578-75159750
173
RIMS2_RAT
1180-1237
58
0
-
-
1.30
ENSRNOT00000050753
30
ENSRNOE00000248608
chr7:
75196983-75197224
242
RIMS2_RAT
1237-1318
82
0
-
-
1.32a
ENSRNOT00000050753
32a
ENSRNOE00000248577
chr7:
75250727-75250868
142
RIMS2_RAT
1318-1365
48
0
-
-
1.33
ENSRNOT00000050753
33
ENSRNOE00000321148
chr7:
75268338-75268450
113
RIMS2_RAT
1365-1403
39
0
-
-
1.34
ENSRNOT00000050753
34
ENSRNOE00000248520
chr7:
75268763-75268864
102
RIMS2_RAT
1403-1437
35
0
-
-
1.35
ENSRNOT00000050753
35
ENSRNOE00000248504
chr7:
75270057-75270196
140
RIMS2_RAT
1437-1483
47
0
-
-
1.36
ENSRNOT00000050753
36
ENSRNOE00000045670
chr7:
75270633-75271771
1139
RIMS2_RAT
1484-1555
72
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2bwqa_ (A:)
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)
(
)
Folds
(
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(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
Synaptotagmin-like (S variant)
(38)
Protein domain
:
automated matches
(6)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d2bwqa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2bwqA00 (A:725-853)
View:
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Rat (Rattus norvegicus)
(8)
1a
2bwqA00
A:725-853
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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