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2BWO
Biol. Unit 1
Info
Asym.Unit (265 KB)
Biol.Unit 1 (128 KB)
Biol.Unit 2 (129 KB)
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(1)
Title
:
5-AMINOLEVULINATE SYNTHASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH SUCCINYL-COA
Authors
:
I. Astner, J. O. Schulze, J. J. Van Den Heuvel, D. Jahn, W. -D. Schubert D. W. Heinz
Date
:
15 Jul 05 (Deposition) - 27 Sep 05 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Keywords
:
Tetrapyrrole Biosynthesis, Heme Biosynthesis, Pyridoxal Phosphate Dependent, Transferase, Acyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Astner, J. O. Schulze, J. J. Van Den Heuvel, D. Jahn, W. -D. Schubert, D. W. Heinz
Crystal Structure Of 5-Aminolevulinate Synthase, The First Enzyme Of Heme Biosynthesis, And Its Link To Xlsa In Humans.
Embo J. V. 24 3166 2005
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
1d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
2a: SUCCINYL-COENZYME A (SCAa)
2b: SUCCINYL-COENZYME A (SCAb)
2c: SUCCINYL-COENZYME A (SCAc)
2d: SUCCINYL-COENZYME A (SCAd)
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Label:
No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
2
SCA
2
Ligand/Ion
SUCCINYL-COENZYME A
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:21 , SER A:137 , ASP A:138 , SER A:139 , ILE A:146 , LYS A:156 , ILE A:158 , THR A:365 , THR B:83 , ASN B:85 , ILE B:275 , PRO E:155 , ARG E:157
BINDING SITE FOR RESIDUE SCA A 500
2
AC2
SOFTWARE
SER A:114 , ALA A:115 , TYR A:116 , HIS A:142 , GLU A:185 , ASP A:214 , VAL A:216 , HIS A:217 , THR A:245 , LYS A:248 , HOH A:2018 , PHE B:276 , SER B:277 , THR B:278
BINDING SITE FOR RESIDUE PLP A 600
3
AC3
SOFTWARE
THR A:83 , ASN A:85 , ILE A:86 , ARG B:21 , SER B:137 , ASP B:138 , SER B:139 , ILE B:146 , LYS B:150 , LYS B:156 , ILE B:158 , THR B:365 , ARG D:157
BINDING SITE FOR RESIDUE SCA B 500
4
AC4
SOFTWARE
PHE A:276 , SER A:277 , THR A:278 , SER B:114 , ALA B:115 , TYR B:116 , HIS B:142 , GLU B:185 , SER B:189 , ASP B:214 , VAL B:216 , HIS B:217 , THR B:245 , LYS B:248
BINDING SITE FOR RESIDUE PLP B 600
5
AC5
SOFTWARE
LYS B:156 , ARG B:157 , ARG D:21 , SER D:137 , ASP D:138 , SER D:139 , ILE D:146 , LYS D:150 , LYS D:156 , ILE D:158 , THR D:365 , HOH D:2028 , THR E:83 , ASN E:85
BINDING SITE FOR RESIDUE SCA D 500
6
AC7
SOFTWARE
PRO A:155 , ARG A:157 , THR D:83 , ASN D:85 , ILE D:275 , PHE D:276 , SER D:277 , THR D:278 , ARG E:21 , SER E:114 , ALA E:115 , TYR E:116 , SER E:137 , ASP E:138 , SER E:139 , HIS E:142 , ILE E:146 , LYS E:150 , LYS E:156 , ILE E:158 , GLU E:185 , SER E:189 , ASP E:214 , HIS E:217 , THR E:245 , LYS E:248 , THR E:365 , HOH E:2019
BINDING SITE FOR RESIDUES SCA E 500 AND PLP E 600
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_2 (A:245-254,B:245-254)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_2
PS00599
Aminotransferases class-II pyridoxal-phosphate attachment site.
HEM1_RHOCB
245-254
2
A:245-254
B:245-254
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2bwoa_ (A:)
1b: SCOP_d2bwoe_ (E:)
1c: SCOP_d2bwob_ (B:)
1d: SCOP_d2bwod_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
automated matches
(28)
Rhodobacter capsulatus [TaxId: 1061]
(3)
1a
d2bwoa_
A:
1b
d2bwoe_
E:
1c
d2bwob_
B:
1d
d2bwod_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (265 KB)
Header - Asym.Unit
Biol.Unit 1 (128 KB)
Header - Biol.Unit 1
Biol.Unit 2 (129 KB)
Header - Biol.Unit 2
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