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2BVN
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
E. COLI EF-TU:GDPNP IN COMPLEX WITH THE ANTIBIOTIC ENACYLOXIN IIA
Authors
:
A. Parmeggiani, I. M. Krab, T. Watanabe, R. C. Nielsen, C. Dahlberg, J. Nyborg, P. Nissen
Date
:
30 Jun 05 (Deposition) - 01 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Translation, Elongation Factor, Gtpase, Antibiotic, Gtp- Binding, Phosphorylation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Parmeggiani, I. M. Krab, T. Watanabe, R. C. Nielsen, C. Dahlberg, J. Nyborg, P. Nissen
Enacyloxin Iia Pinpoints A Binding Pocket Of Elongation Factor Tu For Development Of Novel Antibiotics.
J. Biol. Chem. V. 281 2893 2006
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ENACYLOXIN IIA (ENXa)
1b: ENACYLOXIN IIA (ENXb)
2a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ENX
2
Ligand/Ion
ENACYLOXIN IIA
2
GNP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:25 , GNP A:1394 , HOH A:2003 , HOH A:2004
BINDING SITE FOR RESIDUE MG A1395
2
AC2
SOFTWARE
THR B:25 , GNP B:1394 , HOH B:2005 , HOH B:2006 , HOH B:2007
BINDING SITE FOR RESIDUE MG B1395
3
AC3
SOFTWARE
VAL A:20 , ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , PRO A:82 , GLY A:83 , ASN A:135 , LYS A:136 , ASP A:138 , MET A:139 , SER A:173 , ALA A:174 , LEU A:175 , MG A:1395 , HOH A:2003 , HOH A:2004 , HOH A:2082
BINDING SITE FOR RESIDUE GNP A1394
4
AC4
SOFTWARE
ALA A:96 , LEU A:120 , ARG A:123 , GLN A:124 , VAL A:125 , GLN A:159 , TYR A:160 , LEU A:311 , LYS A:313 , ASP A:314 , GLU A:315 , TYR A:331 , ARG A:333 , ARG A:373 , PHE A:374 , ALA A:375 , HOH A:2081 , HOH A:2083
BINDING SITE FOR RESIDUE ENX A1396
5
AC5
SOFTWARE
VAL B:20 , ASP B:21 , HIS B:22 , GLY B:23 , LYS B:24 , THR B:25 , THR B:26 , PRO B:82 , GLY B:83 , ASN B:135 , LYS B:136 , ASP B:138 , MET B:139 , SER B:173 , ALA B:174 , LEU B:175 , MG B:1395 , HOH B:2005 , HOH B:2007 , HOH B:2095
BINDING SITE FOR RESIDUE GNP B1394
6
AC6
SOFTWARE
ALA B:96 , LEU B:120 , ARG B:123 , GLN B:124 , VAL B:125 , GLN B:159 , TYR B:160 , LEU B:311 , LYS B:313 , ASP B:314 , GLU B:315 , ARG B:333 , ARG B:373 , PHE B:374 , ALA B:375 , HOH B:2097
BINDING SITE FOR RESIDUE ENX B1396
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:55-65,B:57-65,A:55-65,B:57-65)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFTU1_ECOLI
51-66
2
A:55-65
B:57-65
EFTU2_ECOLI
51-66
2
A:55-65
B:57-65
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2bvna2 (A:297-393)
1b: SCOP_d2bvnb2 (B:297-393)
2a: SCOP_d2bvna1 (A:205-296)
2b: SCOP_d2bvnb1 (B:205-296)
3a: SCOP_d2bvna3 (A:9-204)
3b: SCOP_d2bvnb3 (B:6-204)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor Tu (EF-Tu)
(17)
Escherichia coli [TaxId: 562]
(7)
1a
d2bvna2
A:297-393
1b
d2bvnb2
B:297-393
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor Tu (EF-Tu), domain 2
(17)
Escherichia coli [TaxId: 562]
(7)
2a
d2bvna1
A:205-296
2b
d2bvnb1
B:205-296
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor Tu (EF-Tu), N-terminal (G) domain
(19)
Escherichia coli [TaxId: 562]
(9)
3a
d2bvna3
A:9-204
3b
d2bvnb3
B:6-204
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2bvnA01 (A:9-202)
1b: CATH_2bvnB01 (B:6-202)
2a: CATH_2bvnA03 (A:300-392)
2b: CATH_2bvnB03 (B:300-392)
2c: CATH_2bvnA02 (A:205-299)
2d: CATH_2bvnB02 (B:205-299)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 511693. Strain: bl21
(1)
1a
2bvnA01
A:9-202
1b
2bvnB01
B:6-202
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Escherichia coli. Organism_taxid: 511693. Strain: bl21
(1)
2a
2bvnA03
A:300-392
2b
2bvnB03
B:300-392
2c
2bvnA02
A:205-299
2d
2bvnB02
B:205-299
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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