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2BUF
Asym. Unit
Info
Asym.Unit (537 KB)
Biol.Unit 1 (271 KB)
Biol.Unit 2 (263 KB)
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(1)
Title
:
ARGININE FEED-BACK INHIBITABLE ACETYLGLUTAMATE KINASE
Authors
:
S. Ramon-Maiques, M. L. Fernandez-Murga, A. Vagin, I. Fita, V. Rubio
Date
:
12 Jun 05 (Deposition) - 13 Dec 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Acetyglutamate Kinase, Acetylglutamate, Adp, Arginine Biosynthesis, Feed-Back Inhibition, Hexamer, Transferase, Arginine Inhibition, Allosteric Mechanism, Feedback Control, Amino Acid Kinase Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ramon-Maiques, M. L. Fernandez-Murga, F. Gil-Ortiz, A. Vagin, I. Fita, V. Rubio
Structural Bases Of Feed-Back Control Of Arginine Biosynthesis, Revealed By The Structure Of Two Hexameric N-Acetylglutamate Kinases, From Thermotoga Maritima And Pseudomonas Aeruginosa
J. Mol. Biol. V. 356 695 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 34)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: N-ACETYL-L-GLUTAMATE (NLGa)
4b: N-ACETYL-L-GLUTAMATE (NLGb)
4c: N-ACETYL-L-GLUTAMATE (NLGc)
4d: N-ACETYL-L-GLUTAMATE (NLGd)
4e: N-ACETYL-L-GLUTAMATE (NLGe)
4f: N-ACETYL-L-GLUTAMATE (NLGf)
4g: N-ACETYL-L-GLUTAMATE (NLGg)
4h: N-ACETYL-L-GLUTAMATE (NLGh)
4i: N-ACETYL-L-GLUTAMATE (NLGi)
4j: N-ACETYL-L-GLUTAMATE (NLGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
10
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
6
Ligand/Ion
CHLORIDE ION
3
MG
8
Ligand/Ion
MAGNESIUM ION
4
NLG
10
Ligand/Ion
N-ACETYL-L-GLUTAMATE
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:197 , ADP B:1300
BINDING SITE FOR RESIDUE MG B1301
02
AC2
SOFTWARE
ADP C:1300
BINDING SITE FOR RESIDUE MG C1301
03
AC3
SOFTWARE
ADP D:1300
BINDING SITE FOR RESIDUE MG D1301
04
AC4
SOFTWARE
ASN E:197 , ADP E:1299 , NLG E:1301
BINDING SITE FOR RESIDUE MG E1300
05
AC5
SOFTWARE
ADP G:1299
BINDING SITE FOR RESIDUE MG G1300
06
AC6
SOFTWARE
ARG C:5 , TYR G:249
BINDING SITE FOR RESIDUE CL G1302
07
AC7
SOFTWARE
ASN H:37 , ADP H:1297
BINDING SITE FOR RESIDUE MG H1298
08
AC8
SOFTWARE
ASP I:199 , ADP I:1298
BINDING SITE FOR RESIDUE MG I1299
09
AC9
SOFTWARE
ASN L:197 , ADP L:1300
BINDING SITE FOR RESIDUE MG L1301
10
BC1
SOFTWARE
MET L:224
BINDING SITE FOR RESIDUE CL L1303
11
BC2
SOFTWARE
GLY A:67 , GLY A:68 , GLY A:88 , MET A:89 , ARG A:90 , ASN A:195 , ALA A:198
BINDING SITE FOR RESIDUE NLG A1302
12
BC3
SOFTWARE
LYS B:33 , GLY B:36 , ASN B:37 , ASP B:199 , THR B:218 , ASN B:219 , ILE B:220 , GLY B:222 , LEU B:223 , MET B:224 , THR B:247 , TYR B:249 , GLY B:251 , MET B:252 , LYS B:255 , MG B:1301
BINDING SITE FOR RESIDUE ADP B1300
13
BC4
SOFTWARE
GLY B:67 , GLY B:68 , MET B:89 , ARG B:90 , VAL B:159 , ASN B:195 , ILE B:196 , ASN B:197 , ALA B:198
BINDING SITE FOR RESIDUE NLG B1302
14
BC5
SOFTWARE
ASN C:37 , THR C:218 , ASN C:219 , LEU C:223 , MET C:224 , THR C:247 , TYR C:249 , GLY C:251 , MET C:252 , LYS C:255 , MG C:1301
BINDING SITE FOR RESIDUE ADP C1300
15
BC6
SOFTWARE
LYS A:77 , THR D:218 , ASN D:219 , ILE D:220 , GLY D:222 , MET D:224 , THR D:247 , TYR D:249 , GLY D:251 , MET D:252 , LYS D:255 , MG D:1301
BINDING SITE FOR RESIDUE ADP D1300
16
BC7
SOFTWARE
GLY D:67 , GLY D:68 , ILE D:72 , ARG D:90 , VAL D:159 , ASN D:195 , ASN D:197 , ALA D:198
BINDING SITE FOR RESIDUE NLG D1302
17
BC8
SOFTWARE
LYS E:33 , GLY E:36 , ASN E:37 , THR E:218 , ASN E:219 , ILE E:220 , LEU E:223 , MET E:224 , THR E:247 , TYR E:249 , GLY E:251 , MET E:252 , LYS E:255 , MG E:1300
BINDING SITE FOR RESIDUE ADP E1299
18
BC9
SOFTWARE
GLY E:67 , GLY E:68 , GLY E:88 , MET E:89 , ARG E:90 , ASN E:195 , ASN E:197 , ALA E:198 , MG E:1300
BINDING SITE FOR RESIDUE NLG E1301
19
CC1
SOFTWARE
ASN F:37 , THR F:218 , ASN F:219 , ILE F:220 , GLY F:222 , MET F:224 , THR F:247 , ILE F:248 , TYR F:249 , GLY F:251 , MET F:252 , LYS F:255 , MET K:39
BINDING SITE FOR RESIDUE ADP F1299
20
CC2
SOFTWARE
GLY F:67 , GLY F:68 , MET F:89 , ARG F:90 , VAL F:159 , ASN F:195 , ILE F:196 , ASN F:197 , ALA F:198
BINDING SITE FOR RESIDUE NLG F1300
21
CC3
SOFTWARE
THR G:218 , ASN G:219 , GLY G:222 , LEU G:223 , MET G:224 , THR G:247 , TYR G:249 , GLY G:251 , MET G:252 , LYS G:255 , MG G:1300
BINDING SITE FOR RESIDUE ADP G1299
22
CC4
SOFTWARE
GLY G:67 , ILE G:72 , MET G:89 , ARG G:90 , ASN G:195 , ALA G:198
BINDING SITE FOR RESIDUE NLG G1301
23
CC5
SOFTWARE
ASN H:37 , ASP H:199 , THR H:218 , ASN H:219 , ILE H:220 , GLY H:222 , LEU H:223 , MET H:224 , THR H:247 , TYR H:249 , GLY H:251 , MET H:252 , LYS H:255 , MG H:1298
BINDING SITE FOR RESIDUE ADP H1297
24
CC6
SOFTWARE
GLY H:67 , GLY H:69 , ILE H:72 , ARG H:90 , PRO H:184 , ASN H:195 , ILE H:196 , ASN H:197 , ALA H:198
BINDING SITE FOR RESIDUE NLG H1299
25
CC7
SOFTWARE
LYS I:33 , ASN I:37 , THR I:218 , GLY I:222 , LEU I:223 , MET I:224 , THR I:247 , ILE I:248 , TYR I:249 , GLY I:251 , MET I:252 , LYS I:255 , MG I:1299
BINDING SITE FOR RESIDUE ADP I1298
26
CC8
SOFTWARE
ILE I:72 , MET I:89 , ARG I:90 , VAL I:159 , ASN I:195 , ILE I:196 , ASN I:197 , ALA I:198
BINDING SITE FOR RESIDUE NLG I1300
27
CC9
SOFTWARE
ASN J:37 , THR J:218 , ASN J:219 , ILE J:220 , LEU J:223 , MET J:224 , THR J:247 , ILE J:248 , TYR J:249 , GLY J:251 , MET J:252 , LYS J:255
BINDING SITE FOR RESIDUE ADP J1298
28
DC1
SOFTWARE
ARG K:90 , ASN K:195 , ILE K:196 , ASN K:197 , ALA K:198
BINDING SITE FOR RESIDUE NLG K1298
29
DC2
SOFTWARE
LYS E:226 , THR L:218 , ASN L:219 , ILE L:220 , GLY L:222 , LEU L:223 , MET L:224 , THR L:247 , ILE L:248 , TYR L:249 , GLY L:251 , MET L:252 , LYS L:255 , MG L:1301
BINDING SITE FOR RESIDUE ADP L1300
30
DC3
SOFTWARE
GLY L:67 , GLY L:68 , GLY L:88 , MET L:89 , ARG L:90 , ASN L:195 , ASN L:197 , ALA L:198
BINDING SITE FOR RESIDUE NLG L1302
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2bufb_ (B:)
1b: SCOP_d2bufc_ (C:)
1c: SCOP_d2bufl_ (L:)
1d: SCOP_d2bufd_ (D:)
1e: SCOP_d2bufe_ (E:)
1f: SCOP_d2buff_ (F:)
1g: SCOP_d2bufg_ (G:)
1h: SCOP_d2bufh_ (H:)
1i: SCOP_d2bufi_ (I:)
1j: SCOP_d2bufj_ (J:)
1k: SCOP_d2bufk_ (K:)
2a: SCOP_d2bufa1 (A:2-301)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Carbamate kinase-like
(63)
Superfamily
:
Carbamate kinase-like
(63)
Family
:
N-acetyl-l-glutamate kinase
(13)
Protein domain
:
automated matches
(5)
Pseudomonas aeruginosa [TaxId: 287]
(1)
1a
d2bufb_
B:
1b
d2bufc_
C:
1c
d2bufl_
L:
1d
d2bufd_
D:
1e
d2bufe_
E:
1f
d2buff_
F:
1g
d2bufg_
G:
1h
d2bufh_
H:
1i
d2bufi_
I:
1j
d2bufj_
J:
1k
d2bufk_
K:
Protein domain
:
N-acetyl-l-glutamate kinase
(8)
Pseudomonas aeruginosa [TaxId: 287]
(1)
2a
d2bufa1
A:2-301
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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