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2BUF
Biol. Unit 2
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Asym.Unit (537 KB)
Biol.Unit 1 (271 KB)
Biol.Unit 2 (263 KB)
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(1)
Title
:
ARGININE FEED-BACK INHIBITABLE ACETYLGLUTAMATE KINASE
Authors
:
S. Ramon-Maiques, M. L. Fernandez-Murga, A. Vagin, I. Fita, V. Rubio
Date
:
12 Jun 05 (Deposition) - 13 Dec 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Acetyglutamate Kinase, Acetylglutamate, Adp, Arginine Biosynthesis, Feed-Back Inhibition, Hexamer, Transferase, Arginine Inhibition, Allosteric Mechanism, Feedback Control, Amino Acid Kinase Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ramon-Maiques, M. L. Fernandez-Murga, F. Gil-Ortiz, A. Vagin, I. Fita, V. Rubio
Structural Bases Of Feed-Back Control Of Arginine Biosynthesis, Revealed By The Structure Of Two Hexameric N-Acetylglutamate Kinases, From Thermotoga Maritima And Pseudomonas Aeruginosa
J. Mol. Biol. V. 356 695 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: N-ACETYL-L-GLUTAMATE (NLGa)
4b: N-ACETYL-L-GLUTAMATE (NLGb)
4c: N-ACETYL-L-GLUTAMATE (NLGc)
4d: N-ACETYL-L-GLUTAMATE (NLGd)
4e: N-ACETYL-L-GLUTAMATE (NLGe)
4f: N-ACETYL-L-GLUTAMATE (NLGf)
4g: N-ACETYL-L-GLUTAMATE (NLGg)
4h: N-ACETYL-L-GLUTAMATE (NLGh)
4i: N-ACETYL-L-GLUTAMATE (NLGi)
4j: N-ACETYL-L-GLUTAMATE (NLGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
5
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NLG
5
Ligand/Ion
N-ACETYL-L-GLUTAMATE
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
ADP G:1299
BINDING SITE FOR RESIDUE MG G1300
02
AC6
SOFTWARE
ARG C:5 , TYR G:249
BINDING SITE FOR RESIDUE CL G1302
03
AC7
SOFTWARE
ASN H:37 , ADP H:1297
BINDING SITE FOR RESIDUE MG H1298
04
AC8
SOFTWARE
ASP I:199 , ADP I:1298
BINDING SITE FOR RESIDUE MG I1299
05
AC9
SOFTWARE
ASN L:197 , ADP L:1300
BINDING SITE FOR RESIDUE MG L1301
06
BC1
SOFTWARE
MET L:224
BINDING SITE FOR RESIDUE CL L1303
07
CC1
SOFTWARE
ASN F:37 , THR F:218 , ASN F:219 , ILE F:220 , GLY F:222 , MET F:224 , THR F:247 , ILE F:248 , TYR F:249 , GLY F:251 , MET F:252 , LYS F:255 , MET K:39
BINDING SITE FOR RESIDUE ADP F1299
08
CC3
SOFTWARE
THR G:218 , ASN G:219 , GLY G:222 , LEU G:223 , MET G:224 , THR G:247 , TYR G:249 , GLY G:251 , MET G:252 , LYS G:255 , MG G:1300
BINDING SITE FOR RESIDUE ADP G1299
09
CC4
SOFTWARE
GLY G:67 , ILE G:72 , MET G:89 , ARG G:90 , ASN G:195 , ALA G:198
BINDING SITE FOR RESIDUE NLG G1301
10
CC5
SOFTWARE
ASN H:37 , ASP H:199 , THR H:218 , ASN H:219 , ILE H:220 , GLY H:222 , LEU H:223 , MET H:224 , THR H:247 , TYR H:249 , GLY H:251 , MET H:252 , LYS H:255 , MG H:1298
BINDING SITE FOR RESIDUE ADP H1297
11
CC6
SOFTWARE
GLY H:67 , GLY H:69 , ILE H:72 , ARG H:90 , PRO H:184 , ASN H:195 , ILE H:196 , ASN H:197 , ALA H:198
BINDING SITE FOR RESIDUE NLG H1299
12
CC7
SOFTWARE
LYS I:33 , ASN I:37 , THR I:218 , GLY I:222 , LEU I:223 , MET I:224 , THR I:247 , ILE I:248 , TYR I:249 , GLY I:251 , MET I:252 , LYS I:255 , MG I:1299
BINDING SITE FOR RESIDUE ADP I1298
13
CC8
SOFTWARE
ILE I:72 , MET I:89 , ARG I:90 , VAL I:159 , ASN I:195 , ILE I:196 , ASN I:197 , ALA I:198
BINDING SITE FOR RESIDUE NLG I1300
14
CC9
SOFTWARE
ASN J:37 , THR J:218 , ASN J:219 , ILE J:220 , LEU J:223 , MET J:224 , THR J:247 , ILE J:248 , TYR J:249 , GLY J:251 , MET J:252 , LYS J:255
BINDING SITE FOR RESIDUE ADP J1298
15
DC1
SOFTWARE
ARG K:90 , ASN K:195 , ILE K:196 , ASN K:197 , ALA K:198
BINDING SITE FOR RESIDUE NLG K1298
16
DC2
SOFTWARE
LYS E:226 , THR L:218 , ASN L:219 , ILE L:220 , GLY L:222 , LEU L:223 , MET L:224 , THR L:247 , ILE L:248 , TYR L:249 , GLY L:251 , MET L:252 , LYS L:255 , MG L:1301
BINDING SITE FOR RESIDUE ADP L1300
17
DC3
SOFTWARE
GLY L:67 , GLY L:68 , GLY L:88 , MET L:89 , ARG L:90 , ASN L:195 , ASN L:197 , ALA L:198
BINDING SITE FOR RESIDUE NLG L1302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Info
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[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2bufb_ (B:)
1b: SCOP_d2bufc_ (C:)
1c: SCOP_d2bufl_ (L:)
1d: SCOP_d2bufd_ (D:)
1e: SCOP_d2bufe_ (E:)
1f: SCOP_d2buff_ (F:)
1g: SCOP_d2bufg_ (G:)
1h: SCOP_d2bufh_ (H:)
1i: SCOP_d2bufi_ (I:)
1j: SCOP_d2bufj_ (J:)
1k: SCOP_d2bufk_ (K:)
2a: SCOP_d2bufa1 (A:2-301)
View:
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Classes
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)
(
)
Folds
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Carbamate kinase-like
(63)
Superfamily
:
Carbamate kinase-like
(63)
Family
:
N-acetyl-l-glutamate kinase
(13)
Protein domain
:
automated matches
(5)
Pseudomonas aeruginosa [TaxId: 287]
(1)
1a
d2bufb_
B:
1b
d2bufc_
C:
1c
d2bufl_
L:
1d
d2bufd_
D:
1e
d2bufe_
E:
1f
d2buff_
F:
1g
d2bufg_
G:
1h
d2bufh_
H:
1i
d2bufi_
I:
1j
d2bufj_
J:
1k
d2bufk_
K:
Protein domain
:
N-acetyl-l-glutamate kinase
(8)
Pseudomonas aeruginosa [TaxId: 287]
(1)
2a
d2bufa1
A:2-301
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (537 KB)
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