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2BUF
Biol. Unit 1
Info
Asym.Unit (537 KB)
Biol.Unit 1 (271 KB)
Biol.Unit 2 (263 KB)
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(1)
Title
:
ARGININE FEED-BACK INHIBITABLE ACETYLGLUTAMATE KINASE
Authors
:
S. Ramon-Maiques, M. L. Fernandez-Murga, A. Vagin, I. Fita, V. Rubio
Date
:
12 Jun 05 (Deposition) - 13 Dec 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Acetyglutamate Kinase, Acetylglutamate, Adp, Arginine Biosynthesis, Feed-Back Inhibition, Hexamer, Transferase, Arginine Inhibition, Allosteric Mechanism, Feedback Control, Amino Acid Kinase Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ramon-Maiques, M. L. Fernandez-Murga, F. Gil-Ortiz, A. Vagin, I. Fita, V. Rubio
Structural Bases Of Feed-Back Control Of Arginine Biosynthesis, Revealed By The Structure Of Two Hexameric N-Acetylglutamate Kinases, From Thermotoga Maritima And Pseudomonas Aeruginosa
J. Mol. Biol. V. 356 695 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: N-ACETYL-L-GLUTAMATE (NLGa)
4b: N-ACETYL-L-GLUTAMATE (NLGb)
4c: N-ACETYL-L-GLUTAMATE (NLGc)
4d: N-ACETYL-L-GLUTAMATE (NLGd)
4e: N-ACETYL-L-GLUTAMATE (NLGe)
4f: N-ACETYL-L-GLUTAMATE (NLGf)
4g: N-ACETYL-L-GLUTAMATE (NLGg)
4h: N-ACETYL-L-GLUTAMATE (NLGh)
4i: N-ACETYL-L-GLUTAMATE (NLGi)
4j: N-ACETYL-L-GLUTAMATE (NLGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
5
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NLG
5
Ligand/Ion
N-ACETYL-L-GLUTAMATE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC6 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC6 (SOFTWARE)
11: BC7 (SOFTWARE)
12: BC8 (SOFTWARE)
13: BC9 (SOFTWARE)
14: CC1 (SOFTWARE)
15: CC2 (SOFTWARE)
16: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:197 , ADP B:1300
BINDING SITE FOR RESIDUE MG B1301
02
AC2
SOFTWARE
ADP C:1300
BINDING SITE FOR RESIDUE MG C1301
03
AC3
SOFTWARE
ADP D:1300
BINDING SITE FOR RESIDUE MG D1301
04
AC4
SOFTWARE
ASN E:197 , ADP E:1299 , NLG E:1301
BINDING SITE FOR RESIDUE MG E1300
05
AC6
SOFTWARE
ARG C:5 , TYR G:249
BINDING SITE FOR RESIDUE CL G1302
06
BC2
SOFTWARE
GLY A:67 , GLY A:68 , GLY A:88 , MET A:89 , ARG A:90 , ASN A:195 , ALA A:198
BINDING SITE FOR RESIDUE NLG A1302
07
BC3
SOFTWARE
LYS B:33 , GLY B:36 , ASN B:37 , ASP B:199 , THR B:218 , ASN B:219 , ILE B:220 , GLY B:222 , LEU B:223 , MET B:224 , THR B:247 , TYR B:249 , GLY B:251 , MET B:252 , LYS B:255 , MG B:1301
BINDING SITE FOR RESIDUE ADP B1300
08
BC4
SOFTWARE
GLY B:67 , GLY B:68 , MET B:89 , ARG B:90 , VAL B:159 , ASN B:195 , ILE B:196 , ASN B:197 , ALA B:198
BINDING SITE FOR RESIDUE NLG B1302
09
BC5
SOFTWARE
ASN C:37 , THR C:218 , ASN C:219 , LEU C:223 , MET C:224 , THR C:247 , TYR C:249 , GLY C:251 , MET C:252 , LYS C:255 , MG C:1301
BINDING SITE FOR RESIDUE ADP C1300
10
BC6
SOFTWARE
LYS A:77 , THR D:218 , ASN D:219 , ILE D:220 , GLY D:222 , MET D:224 , THR D:247 , TYR D:249 , GLY D:251 , MET D:252 , LYS D:255 , MG D:1301
BINDING SITE FOR RESIDUE ADP D1300
11
BC7
SOFTWARE
GLY D:67 , GLY D:68 , ILE D:72 , ARG D:90 , VAL D:159 , ASN D:195 , ASN D:197 , ALA D:198
BINDING SITE FOR RESIDUE NLG D1302
12
BC8
SOFTWARE
LYS E:33 , GLY E:36 , ASN E:37 , THR E:218 , ASN E:219 , ILE E:220 , LEU E:223 , MET E:224 , THR E:247 , TYR E:249 , GLY E:251 , MET E:252 , LYS E:255 , MG E:1300
BINDING SITE FOR RESIDUE ADP E1299
13
BC9
SOFTWARE
GLY E:67 , GLY E:68 , GLY E:88 , MET E:89 , ARG E:90 , ASN E:195 , ASN E:197 , ALA E:198 , MG E:1300
BINDING SITE FOR RESIDUE NLG E1301
14
CC1
SOFTWARE
ASN F:37 , THR F:218 , ASN F:219 , ILE F:220 , GLY F:222 , MET F:224 , THR F:247 , ILE F:248 , TYR F:249 , GLY F:251 , MET F:252 , LYS F:255 , MET K:39
BINDING SITE FOR RESIDUE ADP F1299
15
CC2
SOFTWARE
GLY F:67 , GLY F:68 , MET F:89 , ARG F:90 , VAL F:159 , ASN F:195 , ILE F:196 , ASN F:197 , ALA F:198
BINDING SITE FOR RESIDUE NLG F1300
16
DC2
SOFTWARE
LYS E:226 , THR L:218 , ASN L:219 , ILE L:220 , GLY L:222 , LEU L:223 , MET L:224 , THR L:247 , ILE L:248 , TYR L:249 , GLY L:251 , MET L:252 , LYS L:255 , MG L:1301
BINDING SITE FOR RESIDUE ADP L1300
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2bufb_ (B:)
1b: SCOP_d2bufc_ (C:)
1c: SCOP_d2bufl_ (L:)
1d: SCOP_d2bufd_ (D:)
1e: SCOP_d2bufe_ (E:)
1f: SCOP_d2buff_ (F:)
1g: SCOP_d2bufg_ (G:)
1h: SCOP_d2bufh_ (H:)
1i: SCOP_d2bufi_ (I:)
1j: SCOP_d2bufj_ (J:)
1k: SCOP_d2bufk_ (K:)
2a: SCOP_d2bufa1 (A:2-301)
View:
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)
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Carbamate kinase-like
(63)
Superfamily
:
Carbamate kinase-like
(63)
Family
:
N-acetyl-l-glutamate kinase
(13)
Protein domain
:
automated matches
(5)
Pseudomonas aeruginosa [TaxId: 287]
(1)
1a
d2bufb_
B:
1b
d2bufc_
C:
1c
d2bufl_
L:
1d
d2bufd_
D:
1e
d2bufe_
E:
1f
d2buff_
F:
1g
d2bufg_
G:
1h
d2bufh_
H:
1i
d2bufi_
I:
1j
d2bufj_
J:
1k
d2bufk_
K:
Protein domain
:
N-acetyl-l-glutamate kinase
(8)
Pseudomonas aeruginosa [TaxId: 287]
(1)
2a
d2bufa1
A:2-301
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (537 KB)
Header - Asym.Unit
Biol.Unit 1 (271 KB)
Header - Biol.Unit 1
Biol.Unit 2 (263 KB)
Header - Biol.Unit 2
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