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2BS9
Biol. Unit 1
Info
Asym.Unit (685 KB)
Biol.Unit 1 (345 KB)
Biol.Unit 2 (343 KB)
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(1)
Title
:
NATIVE CRYSTAL STRUCTURE OF A GH39 BETA-XYLOSIDASE XYNB1 FROM GEOBACILLUS STEAROTHERMOPHILUS
Authors
:
M. Czjzek, T. Bravman, B. Henrissat, Y. Shoham
Date
:
19 May 05 (Deposition) - 12 Oct 05 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Hydrolase, Beta-Xylosidase, Complex Of The Covalent Intermediate, Enzyme-Substrate Complex, Family Gh39, Thermophilic Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Czjzek, A. B. David, T. Bravman, G. Shoham, B. Henrissat, Y. Shoham
Enzyme-Substrate Complex Structures Of A Gh39 Beta- Xylosidase From Geobacillus Stearothermophilus.
J. Mol. Biol. V. 353 838 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:26 , TRP A:117 , GLU A:323 , GLU A:324
BINDING SITE FOR RESIDUE CA A1503
2
AC2
SOFTWARE
ARG C:26 , TRP C:117 , GLU C:323 , GLU C:324
BINDING SITE FOR RESIDUE CA C1503
3
AC3
SOFTWARE
ARG D:26 , TRP D:117 , GLU D:323 , HOH D:2119
BINDING SITE FOR RESIDUE CA D1503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F39 (A:153-162,B:153-162,C:153-162,D:15...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F39
PS01027
Glycosyl hydrolases family 39 active site.
XYNB_GEOSE
153-162
4
A:153-162
B:153-162
C:153-162
D:153-162
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2bs9a1 (A:4-13,A:361-502)
1b: SCOP_d2bs9c1 (C:2-13,C:361-502)
1c: SCOP_d2bs9d1 (D:2-13,D:361-502)
1d: SCOP_d2bs9e1 (E:2-13,E:361-502)
1e: SCOP_d2bs9f1 (F:2-13,F:361-502)
1f: SCOP_d2bs9g1 (G:2-13,G:361-502)
1g: SCOP_d2bs9h1 (H:2-13,H:361-502)
1h: SCOP_d2bs9b1 (B:2-13,B:361-502)
2a: SCOP_d2bs9a2 (A:14-360)
2b: SCOP_d2bs9c2 (C:14-360)
2c: SCOP_d2bs9d2 (D:14-360)
2d: SCOP_d2bs9e2 (E:14-360)
2e: SCOP_d2bs9f2 (F:14-360)
2f: SCOP_d2bs9g2 (G:14-360)
2g: SCOP_d2bs9h2 (H:14-360)
2h: SCOP_d2bs9b2 (B:14-360)
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Classes
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(
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
(30)
Protein domain
:
Beta-D-xylosidase
(5)
Bacillus stearothermophilus [TaxId: 1422]
(3)
1a
d2bs9a1
A:4-13,A:361-502
1b
d2bs9c1
C:2-13,C:361-502
1c
d2bs9d1
D:2-13,D:361-502
1d
d2bs9e1
E:2-13,E:361-502
1e
d2bs9f1
F:2-13,F:361-502
1f
d2bs9g1
G:2-13,G:361-502
1g
d2bs9h1
H:2-13,H:361-502
1h
d2bs9b1
B:2-13,B:361-502
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Beta-D-xylosidase, catalytic domain
(5)
Bacillus stearothermophilus [TaxId: 1422]
(3)
2a
d2bs9a2
A:14-360
2b
d2bs9c2
C:14-360
2c
d2bs9d2
D:14-360
2d
d2bs9e2
E:14-360
2e
d2bs9f2
F:14-360
2f
d2bs9g2
G:14-360
2g
d2bs9h2
H:14-360
2h
d2bs9b2
B:14-360
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2bs9A02 (A:15-359)
1b: CATH_2bs9B02 (B:15-359)
1c: CATH_2bs9C02 (C:15-359)
1d: CATH_2bs9D02 (D:15-359)
1e: CATH_2bs9E02 (E:15-359)
1f: CATH_2bs9F02 (F:15-359)
1g: CATH_2bs9G02 (G:15-359)
1h: CATH_2bs9H02 (H:15-359)
2a: CATH_2bs9A01 (A:2-14,A:360-482)
2b: CATH_2bs9B01 (B:2-14,B:360-482)
2c: CATH_2bs9C01 (C:2-14,C:360-482)
2d: CATH_2bs9D01 (D:2-14,D:360-482)
2e: CATH_2bs9E01 (E:2-14,E:360-482)
2f: CATH_2bs9F01 (F:2-14,F:360-482)
2g: CATH_2bs9G01 (G:2-14,G:360-482)
2h: CATH_2bs9H01 (H:2-14,H:360-482)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Bacillus stearothermophilus. Organism_taxid: 1422. Strain: t-6.
(2)
1a
2bs9A02
A:15-359
1b
2bs9B02
B:15-359
1c
2bs9C02
C:15-359
1d
2bs9D02
D:15-359
1e
2bs9E02
E:15-359
1f
2bs9F02
F:15-359
1g
2bs9G02
G:15-359
1h
2bs9H02
H:15-359
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Glycosyl hydrolase domain; family 39
(5)
Bacillus stearothermophilus. Organism_taxid: 1422. Strain: t-6.
(2)
2a
2bs9A01
A:2-14,A:360-482
2b
2bs9B01
B:2-14,B:360-482
2c
2bs9C01
C:2-14,C:360-482
2d
2bs9D01
D:2-14,D:360-482
2e
2bs9E01
E:2-14,E:360-482
2f
2bs9F01
F:2-14,F:360-482
2g
2bs9G01
G:2-14,G:360-482
2h
2bs9H01
H:2-14,H:360-482
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Pfam Domains
(0, 0)
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Asym.Unit (685 KB)
Header - Asym.Unit
Biol.Unit 1 (345 KB)
Header - Biol.Unit 1
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